Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30701
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    30   0.31 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    29   0.71 
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    29   0.94 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.2  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     27   2.2  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   3.8  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    26   5.0  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   6.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.6  

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -1

Query: 680 KKLPDFWKSPGCPGKEISEISKFNYFFFKSLTPKINYPTKFVNTLEYAYQNIYLQTV 510
           +KLPD WK   C G++  + S  N  +  S+ PK   P+   N +   ++N YLQ +
Sbjct: 501 RKLPDSWKQDKCSGRDDLDNSVLNDDYI-SVAPK---PSHVKNIMH--HENQYLQAL 551


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 623 FRKFLFRDNREISKNRGVFS 682
           +R F+F  NR+I++N GVFS
Sbjct: 662 YRAFVFLHNRDIAENNGVFS 681


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 138 KPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQ-PYPVHVQWS 263
           +P        +  P+P  +A+  P Y   P+ Q  YPV+  WS
Sbjct: 8   QPISTPSASVVTAPLPATIALPSPNYYYPPVAQGHYPVNNMWS 50


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 634  KFPKFQNLITFFLRASHPKL 575
            K P FQNL+T F ++ H +L
Sbjct: 1146 KLPSFQNLVTVFCQSCHKEL 1165


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 255 GRGPGRVEVWAPSRTAG 205
           G+G GRVE+W  +RT G
Sbjct: 190 GKGNGRVEIWFGARTPG 206


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 150 VTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYP 245
           V +++ +G P  H ++V  P YV   +P   P
Sbjct: 236 VEIIRVLGTPSYHEISVMNPNYVNHSLPNVRP 267


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 613 NFEISEISFPGQPGDFQKSGSFFPN 687
           NF+  + S P + G +  SGS FPN
Sbjct: 7   NFQNEDSSHPNEQGAWADSGSGFPN 31


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 616 FEISEISFPGQPGDFQKSGSFFPNLMGLFWPRDLPF 723
           F I +I  P   GD+Q+   FF ++  +  PR   F
Sbjct: 150 FSIVQILLPKLSGDYQEHVQFFASISAVVAPRGYVF 185


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +3

Query: 216 VKVPIPQPYPVHVQWSNLSMYLFIRLSTKLLKNQYRTRSKNQCPMKSKSL 365
           + + + + +P  V +S ++  +  + S + +KN   TRS N+   K++ L
Sbjct: 424 IVLQVLESFPAAVSFSTITNTIQAKYSNRKIKNSNITRSLNRLVRKNRVL 473


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 177 PIPHPVAVSVPQYVKVPIPQPYPVHV 254
           P P P AV VP     PIP P P  +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,568
Number of Sequences: 5004
Number of extensions: 71405
Number of successful extensions: 215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)