Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30701
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0005 + 13865016-13865025,13865247-13865374,13865467-138659... 31 0.98
11_06_0679 - 26227654-26227770,26234067-26236217 30 1.7
07_01_0975 + 8223269-8224354 30 1.7
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 30 2.3
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 29 3.0
07_03_0698 - 20765305-20768526 28 6.9
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 28 6.9
12_01_1091 + 11349034-11349438,11350581-11350748,11351189-113515... 28 9.1
07_01_0359 - 2633735-2634115,2634345-2634600,2634708-2635552,263... 28 9.1
03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584 28 9.1
01_06_1623 - 38716606-38717424 28 9.1
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589... 28 9.1
>02_03_0005 +
13865016-13865025,13865247-13865374,13865467-13865994,
13866111-13866287
Length = 280
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 168 IGVPIPHPVAVSVPQYVKVPIPQ-PYPVHVQWSNLSMYLFIRLST 299
IG P+P+P +V VP V VPIP P+H Q L Y + R T
Sbjct: 91 IGPPLPYPFSVPVP--VPVPIPSGAVPMHPQ---LQAYPYFRNQT 130
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/64 (28%), Positives = 24/64 (37%)
Frame = -3
Query: 261 STGRGPGRVEVWAPSRTAGPTQPPDGESELRSSSPRSHGTASCVLCACGLRAPILQKAER 82
++GRG GR W R G PD ++ P H T C C + P E
Sbjct: 587 NSGRGRGRW--WNNERGKGRENKPDQTKFCQTHGPGGHSTEECYSKFCHIHGPGGHSTEE 644
Query: 81 WRAL 70
R +
Sbjct: 645 CRQM 648
>07_01_0975 + 8223269-8224354
Length = 361
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 261 STGRGPGRVEVWAPSRTAGPTQPPD--GESELRSSSPRSHGTA 139
S+G G E +PS AGP + P G +E S SP S G+A
Sbjct: 304 SSGAASGPAEGPSPSGAAGPAEGPSSYGSTEGPSPSPSSSGSA 346
>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 87 RPSEEWEPEGHTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 239
RPS GH H P + + + P P PV +SVP+ + P P P
Sbjct: 947 RPSRSEFKGGHDHRSPCVPSNRRDIPLVRRP-PSPVVLSVPRVPRPPPPSP 996
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 676 NSPIFGNLPVVPEKKFPKFQNLI 608
N + NLPVVP +KF K +N+I
Sbjct: 61 NVVVVDNLPVVPPEKFEKLENVI 83
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 409 LRDGHLYFFFDLNGIRLFDFIGHWFFD-RVRYWFFNNLVDNLI 284
L G L L+GIR H F + +R+W F NL+D +I
Sbjct: 950 LNQGALDVLSRLDGIRYLRLCYHSFAEGALRFWSFGNLMDLII 992
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 502 LIGCESKPAHLVFTPLMVVDVFVHGYMDGIGLR 404
LI C +K HLV P+ ++ V + G DGI L+
Sbjct: 172 LISC-NKTGHLVLPPIFLLQVGLRGINDGIILK 203
>12_01_1091 +
11349034-11349438,11350581-11350748,11351189-11351500,
11351995-11352063,11352177-11352269,11352642-11352844,
11354783-11355056,11355561-11355606,11355646-11355806
Length = 576
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 47 NNSRPSLSSARQRSAF*RMGARRPHAHRTHEAVPCD-RGEEDRSSDSPSGGCVGPAVREG 223
+N RP+++ Q S + AR H A P + GEE +PS V A+R
Sbjct: 22 HNPRPAVAIEAQHSFPHGLLARAACQPLRHVAAPAEGEGEEVEDLGTPSAAAVAEAIRRA 81
Query: 224 AHTS 235
+ S
Sbjct: 82 SSAS 85
>07_01_0359 -
2633735-2634115,2634345-2634600,2634708-2635552,
2635681-2635956,2636778-2636941,2637924-2638197
Length = 731
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 166 FFTTVTWYGFVCSVCVWPSGSHSSEGRALASAT 68
F +V W FV +W S H S RA A +T
Sbjct: 155 FLLSVYWVSFVTYFVLWKSYKHVSNMRAAARST 187
>03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584
Length = 438
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 129 EHTKPYH-VTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 239
E T P+ V V + P+PVAV+V + P+PQP
Sbjct: 72 ESTTPHSPVAVDEPESSTAPNPVAVAVAEPKPAPVPQP 109
>01_06_1623 - 38716606-38717424
Length = 272
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 138 KPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIP 233
+PY V V++ IG PIP A +VP + +P+P
Sbjct: 11 RPYFVDVLQSIGHPIP---ATAVPD-ITLPVP 38
>01_05_0416 +
21956050-21956512,21958001-21958065,21958772-21958933,
21959006-21959107
Length = 263
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 116 PHAHRTHEAVPCDRGEEDRSSDSPSGGCVGPAVREGAHTSTLPGPRPVE 262
PH+HR HEA+ + + R + PS P + ++ G RP E
Sbjct: 30 PHSHRAHEALARHKSPDFRRTGPPSRTNTSP--QPPKDSTARSGRRPTE 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,807,957
Number of Sequences: 37544
Number of extensions: 486647
Number of successful extensions: 1802
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1790
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -