Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30701
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    31   1.1  
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR...    30   1.4  
At1g60460.1 68414.m06807 hypothetical protein                          30   1.4  
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00...    29   2.5  
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ...    29   3.3  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    29   4.4  
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila...    29   4.4  
At5g02210.1 68418.m00142 expressed protein ; expression supporte...    28   5.8  
At1g42700.1 68414.m04928 hypothetical protein                          28   5.8  
At1g21790.1 68414.m02727 expressed protein                             28   5.8  
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ...    28   7.6  
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ...    28   7.6  

>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 718 ANPGAKINPLNSGKNSPIFGNLPVVPEKKFPKFQNLITFFLRASHPKL 575
           + PG  I   N+ ++SP+FG+ P   +   P F      F + + P L
Sbjct: 497 STPGFSIGGFNNSQSSPLFGSNPSFAQNTTPAFSQTSPLFGQNTTPAL 544


>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1231

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 686 FGKKLPDFWKSPGCPGKEISEISKFN 609
           FG+ L D W+ PGC     S I K+N
Sbjct: 122 FGRNLWDLWRKPGCGRDRDSRIVKWN 147


>At1g60460.1 68414.m06807 hypothetical protein
          Length = 356

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 246 VHVQWSNLSMYLFIRLSTKLLKNQYRTRSKN 338
           V ++W N   Y+ I+++     NQY TR KN
Sbjct: 194 VFLEWDNFPSYVQIQIALHWYHNQYPTRQKN 224


>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 435

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +3

Query: 147 HVTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 239
           H+ +   + +P+P P+A+++P  + +P+P P
Sbjct: 372 HMHMPMPMAMPMPMPIAMAMPMPMPMPMPMP 402


>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           gb:D86122
          Length = 785

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 697 NPLNSGKNSPIFGNLPVVPEKKFPKF 620
           +PL S   SPIFGNL      ++P+F
Sbjct: 341 HPLQSFSKSPIFGNLSPTKNIRYPEF 366


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 129 EHTKPYHVTVVKKIGVPIPHPVAVSVPQYV--KVPIPQPYPVH 251
           EH   Y   +VKK   P P PV +  P  V  K P P P PV+
Sbjct: 362 EHPPIYIPPIVKK---PCPPPVPIYKPPVVIPKKPCPPPVPVY 401


>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
           to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
           {Mus musculus}
          Length = 865

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 157 TVTWYGFVCSVCVWPSGSHSSEGRALASATKRRTTVVLKAIMLP 26
           T T  G  CS+C  P+  HS   + + +  +   T+VL  +  P
Sbjct: 711 TKTGAGMPCSLCPHPTCQHSVRNQGVCACPECEGTLVLDPVSFP 754


>At5g02210.1 68418.m00142 expressed protein ; expression supported
           by MPSS
          Length = 161

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 291 LSTKLLKNQYRTRSKNQCPMKSK 359
           +S+++LK +YR++  NQ PM+ K
Sbjct: 4   ISSRILKPEYRSQYNNQIPMQEK 26


>At1g42700.1 68414.m04928 hypothetical protein
          Length = 149

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 288 RLSTKLLKNQYRTRSKNQCPMKSKSLIPLRSKKK*---RCPSLSPIPSMYPCTNTSTTI 455
           +L+ K+++N   T   N  P  +     +  +++    RC  L P PS +    T+TT+
Sbjct: 22  KLAKKIIQNAGDTNGNNSTPNSNDDFAQVFGRERPGRVRCVGLGPTPSSFIQNRTTTTL 80


>At1g21790.1 68414.m02727 expressed protein
          Length = 288

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 266 VAPLDVDRVGLRYGHLHVLRDRHSHRMGNRNSDLLHHG 153
           +A +++  VGL     H  R   SHR    N +L  HG
Sbjct: 250 MAGMNILNVGLGLDLFHAFRRERSHRRNQENGNLHDHG 287


>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
           profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
           domain;
          Length = 299

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 177 PIPHPVAVSVPQYVKVPIPQPYPVHVQWS 263
           P P P  V+  + V  PIP+P P  +  S
Sbjct: 130 PTPTPAPVAATETVTTPIPEPVPATISSS 158


>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
           profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
           domain;
          Length = 419

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 177 PIPHPVAVSVPQYVKVPIPQPYPVHVQWS 263
           P P P  V+  + V  PIP+P P  +  S
Sbjct: 130 PTPTPAPVAATETVTTPIPEPVPATISSS 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,551
Number of Sequences: 28952
Number of extensions: 384210
Number of successful extensions: 1188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)