Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30699
         (895 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    28   0.086
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    28   0.086
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   5.6  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    22   7.5  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   7.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.9  

>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 28.3 bits (60), Expect = 0.086
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 450 C*NHRDRPHHQRTRSHHHRGRNPLDRQNCDRR 355
           C     R HH +T    H G  P   ++CDR+
Sbjct: 15  CHKRFTRDHHLKTHMRLHTGERPYRCEHCDRQ 46


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 0.086
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 450 C*NHRDRPHHQRTRSHHHRGRNPLDRQNCDRR 355
           C     R HH +T    H G  P   ++CDR+
Sbjct: 168 CHKRFTRDHHLKTHMRLHTGERPYRCEHCDRQ 199



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 426 HHQRTRSHHHRGRNPLDRQNCDRR 355
           +H+RT    H G  P + Q C +R
Sbjct: 152 NHERT----HTGEKPFECQECHKR 171


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +1

Query: 136 FAYGGQDFSGGQGHTIALTQEGGGHDFSEAQALGGHNLGPRS---LDMAHPSVETLAVTR 306
           F +G    + G G ++  T   G +  + +  L GH +   +   ++ A   V TL++  
Sbjct: 608 FDFGEDSINEGDGVSVQCTVSKGDYPLNISWTLNGHFIDQTNGIVINRASKRVSTLSIDN 667

Query: 307 TFKQHM 324
               H+
Sbjct: 668 VQSTHV 673


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 399 HRGRNPLDRQNCDRRNRLDPIGV 331
           + GR   D  NC    RL P GV
Sbjct: 285 YTGRATCDCPNCQEAERLGPAGV 307


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 575 HGKWLPRDRHNSPAMAVNHALHLKSK 498
           HG+W     HNSP   +  A   + K
Sbjct: 711 HGQWERTVGHNSPLFPLESATSYQKK 736



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 575 HGKWLPRDRHNSP 537
           HGKW     HN+P
Sbjct: 282 HGKWERETGHNAP 294


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 789 KIFRFSKLGNNQRGFV*R 736
           K+  F KLGN + GFV R
Sbjct: 186 KLRFFEKLGNRRLGFVQR 203


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 789 KIFRFSKLGNNQRGFV*R 736
           K+  F KLGN + GFV R
Sbjct: 186 KLRFFEKLGNRRLGFVQR 203


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 506 SDGGHDLRPWRANYG 550
           +DGG+ ++  RA YG
Sbjct: 565 ADGGNSMKKCRARYG 579


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 506 SDGGHDLRPWRANYG 550
           +DGG+ ++  RA YG
Sbjct: 457 ADGGNSMKKCRARYG 471


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,982
Number of Sequences: 336
Number of extensions: 5584
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)