Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30699
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    28   1.6  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    28   2.1  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    27   2.7  
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy...    26   6.3  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    26   6.3  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    26   8.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.3  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   8.3  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   8.3  

>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 622 LTSTLIFPVHKPIHI*PAPNPIFKFGVTFKTFIPVKNTP 738
           +T    +PV     I P  +PI  FG+ ++ FIP    P
Sbjct: 596 ITPPFSYPVAYCPAIPPGSDPILNFGIQYQPFIPFTAVP 634


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 503 SSDGGHDLRPWRANYGGHVEAISRGKSYRFSQSPVPSYP 619
           SSDGG DL  W+    G  +    G  Y+ + +    YP
Sbjct: 31  SSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYP 69


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 119 WPCSSPATSLEYPPSNPALQVATASSKQMNIFMFDL 12
           +P SSP  S+++ PSNP   +    +  + IF + L
Sbjct: 181 YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL 216


>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 618 PFNKHVNFPSSQAYSHLTCPKPNF*VRSYLQNLYSS*KYPVKQSPVGCSQ-VLRTGKSSI 794
           P +  +N P+S +Y  LT   PN  +++  ++L+ S       SP+  SQ   R  K+S 
Sbjct: 137 PISLSIN-PASTSYEKLTVSSPNSFLKNQDESLFLS------SSPITVSQGTKRKSKNSN 189

Query: 795 FPIRKK 812
             ++KK
Sbjct: 190 STVKKK 195


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 47  WQLPLARLGSKVDTPTKLLEMSRAIT 124
           + +P+A L   +D PT  +E+  AIT
Sbjct: 96  YAIPMAVLAKSIDLPTYFVELRHAIT 121


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 687 NWVWGRLNVNRLVNWE 640
           N VW + N+NR+  WE
Sbjct: 522 NDVWSKFNINRIDGWE 537


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -3

Query: 173 PWPPEKSWPPYAKF*PP----LWPCSSPATSLEYPPSNPALQVA 54
           P P   S PP     PP    L P + PA  ++ PPS P+L  A
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSA 193


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 146  PYAKF*P--PLWPCSSPATSLEYPPSNPALQVATASS 42
            PY    P  P+   S  ++S   PPSNP   +A ASS
Sbjct: 956  PYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASS 992


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 21/70 (30%), Positives = 25/70 (35%)
 Frame = +1

Query: 73  FEGGYSNEVAGDEQGHNGGQNFAYGGQDFSGGQGHTIALTQEGGGHDFSEAQALGGHNLG 252
           FE  + +  AG   G  GG     GG D              GGG     A   GG   G
Sbjct: 125 FERVFGHAFAGG--GGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAG 182

Query: 253 PRSLDMAHPS 282
           P +   +HPS
Sbjct: 183 PHA-RRSHPS 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,930,447
Number of Sequences: 5004
Number of extensions: 87358
Number of successful extensions: 259
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)