Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30699
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    28   0.13 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.7  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 450 C*NHRDRPHHQRTRSHHHRGRNPLDRQNCDRR 355
           C     R HH +T    H G  P    +CDR+
Sbjct: 15  CHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQ 46


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 491  PDVYSSDGGHDLRPWRAN 544
            P   +S GGH +RPWR +
Sbjct: 1313 PARITSFGGHVVRPWRGS 1330


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 491  PDVYSSDGGHDLRPWRAN 544
            P   +S GGH +RPWR +
Sbjct: 1309 PARITSFGGHVVRPWRGS 1326


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 533 WRANYGGHVEAISRGKSYRFSQSPVPSYPF 622
           W   Y   +E    G+ + F    VPSYPF
Sbjct: 294 WLREYDRELEDFD-GRLFEFPIKFVPSYPF 322


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 70  GFEGGYSNEVAGDEQGHNGGQ 132
           G++G  SN V G+E  HN G+
Sbjct: 261 GWDG--SNMVEGNESDHNDGR 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,990
Number of Sequences: 438
Number of extensions: 6721
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)