Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30698
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0602 + 19183549-19184919                                         33   0.37 
01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646     31   1.5  
08_02_0642 + 19641263-19641990,19642077-19642484,19642585-19642636     29   4.6  
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24...    29   4.6  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    29   6.0  
06_03_0929 - 26028345-26028390,26028474-26028610,26028695-260288...    28   8.0  

>08_02_0602 + 19183549-19184919
          Length = 456

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +3

Query: 294 ATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEE---YAHPKYDFAYSVADG 464
           A+  +AAA P   A  +  A     V +    +L+SA HE     YA+ + D A   ADG
Sbjct: 198 ASGSVAAALP---AGVLDDACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADG 254

Query: 465 HSGDNKSQHESRDGE 509
           H   ++SQ E   G+
Sbjct: 255 HHNQDESQREHHHGQ 269


>01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646
          Length = 378

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 258 SSQTILRHDQPHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPK 434
           SS+  +RH + H+++ +  A P+  A P+  ++P++    P   +  S HHE +  H K
Sbjct: 209 SSRIAIRHSRDHSSDCLTPA-PMPPA-PLSCSSPISIKQPPRLSIQRSQHHERDTRHAK 265


>08_02_0642 + 19641263-19641990,19642077-19642484,19642585-19642636
          Length = 395

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 570 PLTNQPRLQR*SSATPAPVQPRQLQCLPKEPRSSLAHSLNFF 695
           P T +  L + SSA+  P+    L  LP +P + +AH+  FF
Sbjct: 187 PNTGRIALAQISSASALPLAAVLLLALPNDPSTGVAHAAVFF 228


>06_01_0025 -
           244068-244177,244279-244333,244500-244527,244621-244691,
           244829-244926,245069-245186,245573-245636,245744-245808,
           245893-245928,246255-246311,246422-246691
          Length = 323

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +3

Query: 306 IAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADG 464
           +AAA P  YA  +  AAP A +  P      S     EY H  Y F   +  G
Sbjct: 43  LAAAHPYGYAPWLANAAPAALLRRPVSTTFYSFDLLREYPHDPYAFTQGLLYG 95


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 25/76 (32%), Positives = 32/76 (42%)
 Frame = +3

Query: 462 GHSGDNKSQHESRDGELCTASTLWLKLTVQCARLSTPLTNQPRLQR*SSATPAPVQPRQL 641
           G SG++K    S   +    S++   L    A  STPL N P      S+   PV P  L
Sbjct: 557 GFSGNSKGSILSNPSKSVLTSSISESLEEAKANCSTPLKNPPFS---LSSVNKPVTPTDL 613

Query: 642 QCLPKEPRSSLAHSLN 689
           Q L  E      HSL+
Sbjct: 614 QHLGSEFIFGSNHSLS 629


>06_03_0929 -
           26028345-26028390,26028474-26028610,26028695-26028826,
           26028901-26029109,26029554-26029674,26030730-26031080
          Length = 331

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 24/94 (25%), Positives = 36/94 (38%)
 Frame = +3

Query: 345 HYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGELCTAS 524
           HY      + A A       HH     HP +  A  V  G  G    + ++         
Sbjct: 4   HYQDHALAMDAAAAAAETGGHH-----HPGFVGAGGVVGGGGGGGWEREKAAIAAHPLYE 58

Query: 525 TLWLKLTVQCARLSTPLTNQPRLQR*SSATPAPV 626
            L L+  V C R++TP+   PR+    +A P P+
Sbjct: 59  RL-LEAHVACLRVATPVDQLPRIDAQIAARPPPL 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,352,753
Number of Sequences: 37544
Number of extensions: 281114
Number of successful extensions: 936
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)