Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30698
         (835 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11932| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0)              30   2.7  
SB_10969| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  

>SB_11932| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0)
          Length = 498

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 447 YSVADGHSGDNKSQHESRDGELCTASTLWLKLTV-QCARLSTPLTNQPRLQR 599
           YS+A G+ GD K  H++R G     + L    T+    RL++P+  + +L +
Sbjct: 38  YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAK 89


>SB_10969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 447 YSVADGHSGDNKSQHESRDGELCTASTLWLKLTV-QCARLSTPLTNQPRLQR 599
           YS+A G+ GD K  H++R G     + L    T+    RL++P+  + +L +
Sbjct: 450 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAK 501


>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +3

Query: 288 PHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYD 440
           PHA  + A     HYA P + AAP +++     K     +       P YD
Sbjct: 622 PHAQVFFAGRGVHHYAIPQYTAAPSSEIAKIVKKEPTECNETSSVWRPWYD 672


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,975,823
Number of Sequences: 59808
Number of extensions: 295078
Number of successful extensions: 964
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)