Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30698
(835 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 31 1.3
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 31 1.3
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 31 1.3
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 29 4.1
U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase ... 29 4.1
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 28 7.2
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 9.5
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 28 9.5
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +3
Query: 312 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 491
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 492 ESRDGE 509
S +GE
Sbjct: 1564 GSENGE 1569
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +3
Query: 312 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 491
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1542 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1601
Query: 492 ESRDGE 509
S +GE
Sbjct: 1602 GSENGE 1607
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +3
Query: 312 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 491
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 492 ESRDGE 509
S +GE
Sbjct: 1564 GSENGE 1569
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 447 YSVADGHSGDNKSQHESRDGELCTASTLWLKLTV-QCARLSTPLTNQPRLQR 599
YS+A G+ GD K H+SR G + L T+ R ++P+ + +L +
Sbjct: 452 YSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAK 503
>U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase II,
second largestsubunit protein.
Length = 859
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 447 YSVADGHSGDNKSQHESRDGELCTASTLWLKLTV-QCARLSTPLTNQPRLQR 599
YS+A G+ GD K H+SR G + L T+ R ++P+ + +L +
Sbjct: 253 YSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAK 304
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 306 IAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSA 404
+ AAAP A+P AP A ++AP VL +A
Sbjct: 55 VLAAAPTVLAAPAPLLAPPAPLLAPPAPVLAAA 87
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 575 DEPTTASTLIVSNTGPGSTTAASMFAQGTPF 667
++PT + L+ N GPGS++ M + PF
Sbjct: 540 NDPTNSPVLLWLNGGPGSSSLWGMLTENGPF 570
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +2
Query: 542 DG-SVRKVEY----TADEPTTASTLIVSNTGPGSTTAASMFAQGTPF 667
DG S KV Y + + P+T L+ N GPGS++ +F + PF
Sbjct: 1570 DGLSGHKVHYWLVESENNPSTDPLLLWLNGGPGSSSLMGLFEENGPF 1616
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 575 DEPTTASTLIVSNTGPGSTTAASMFAQGTPF 667
++PT + L+ N GPGS++ M + PF
Sbjct: 540 NDPTNSPVLLWLNGGPGSSSLWGMLTENGPF 570
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +2
Query: 542 DG-SVRKVEY----TADEPTTASTLIVSNTGPGSTTAASMFAQGTPF 667
DG S KV Y + + P+T L+ N GPGS++ +F + PF
Sbjct: 1570 DGLSGHKVHYWLVESENNPSTDPLLLWLNGGPGSSSLMGLFEENGPF 1616
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 575 DEPTTASTLIVSNTGPGSTTAASMFAQGTPF 667
++PT + L+ N GPGS++ M + PF
Sbjct: 540 NDPTNSPVLLWLNGGPGSSSLWGMLTENGPF 570
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +2
Query: 542 DG-SVRKVEY----TADEPTTASTLIVSNTGPGSTTAASMFAQGTPF 667
DG S KV Y + + P+T L+ N GPGS++ +F + PF
Sbjct: 1570 DGLSGHKVHYWLVESENNPSTDPLLLWLNGGPGSSSLMGLFEENGPF 1616
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,261,252
Number of Sequences: 27780
Number of extensions: 222125
Number of successful extensions: 816
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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