Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30696
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    36   0.010
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    31   0.17 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    30   0.38 
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    29   1.2  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    28   2.0  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   2.0  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    27   2.7  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   3.6  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   4.7  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   4.7  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    27   4.7  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   8.2  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    26   8.2  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 16/52 (30%), Positives = 32/52 (61%)
 Frame = +1

Query: 97   EKLQYVHHNHELEIEKLTSQINSLKTDLDSVTKNYEYAQKDICEHISVMDNL 252
            + LQ+V+  H +E++ L  QINS K  + SV   YE  ++++ + I+ ++ +
Sbjct: 1450 QSLQHVNLAHAIELKALKDQINSEKAKMFSVQVQYEKREQELQKRIASLEKV 1501



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 73   RTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSV-TKNYEYAQKDICEHISVMDN 249
            + + N   + LQ      + E++KLT  I+  KT++  +   N +  +K I +  S+ ++
Sbjct: 973  KAEFNEQCKSLQETIVTKDAELDKLTKYISDYKTEIQEMRLTNQKMNEKSIQQEGSLSES 1032

Query: 250  L 252
            L
Sbjct: 1033 L 1033



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
 Frame = +1

Query: 16   KSRKSINYMKTICKERNALRTKL-NTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVT 192
            K ++ +N +K++ KE      K  N S   L+Y+      E++++   +    +DL++  
Sbjct: 1118 KVKECLNNIKSLTKELENKEEKCQNLSDASLKYI------ELQEIHENLLLKVSDLENYK 1171

Query: 193  KNYEYAQKDICEHISVMDNLLIYVIIIKSDLNL*HYNMLIASAT 324
            K YE  Q D+ E +  +D     +     DL   H ++L  SA+
Sbjct: 1172 KKYEGLQLDL-EGLKDVDTNFQELSKKHRDLTFNHESLLRQSAS 1214


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 15/61 (24%), Positives = 34/61 (55%)
 Frame = +1

Query: 37  YMKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTKNYEYAQK 216
           ++K+  +++     KL+ SLE L   +++ + EI +  +++NS+ + L     + E A K
Sbjct: 519 FLKSQIRDQELTIEKLHDSLETLSQTNNSLQCEISEKNAELNSVNSKLSEGRAHLETANK 578

Query: 217 D 219
           +
Sbjct: 579 E 579


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 22/89 (24%), Positives = 40/89 (44%)
 Frame = +1

Query: 16  KSRKSINYMKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTK 195
           K   S N + +  K+ N L  K N     + Y   N +  ++ L   +NSL+  L +  +
Sbjct: 335 KLEDSKNSVLSFLKDENELFMKQNQLYRTILYETRNKKTLVQNL---LNSLEGKLQAHLE 391

Query: 196 NYEYAQKDICEHISVMDNLLIYVIIIKSD 282
            +E  ++DI E    + +L      +K+D
Sbjct: 392 KFEQTERDISEKNEEVKSLREKAAKVKND 420


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 79  KLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLD 183
           KLN+S+  +++  H  E E EK+    +SLK D++
Sbjct: 149 KLNSSISSIRFTQHEFEAESEKIIH--HSLKGDIE 181


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 133 EIEKLTSQINSLKTDLDSVTKNYE 204
           +IE L  Q++ LKT+++SVT + E
Sbjct: 695 QIESLNDQLSQLKTEMESVTTSKE 718


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/61 (24%), Positives = 33/61 (54%)
 Frame = +1

Query: 31  INYMKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTKNYEYA 210
           +++  ++ +ER+   T L      LQY + N  +E+E L S+   L++ L+    + +Y+
Sbjct: 789 LSFEDSLRRERDEKST-LQQKCLNLQYEYENVRIELENLQSRALELESALEQSVSDAKYS 847

Query: 211 Q 213
           +
Sbjct: 848 K 848


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 616 EKGECRYKGL*NIQINPFIKPYRVGKRIHVMV 711
           +KG CR      +Q N  + PY+ G R H  V
Sbjct: 55  DKGNCRVNTGYRVQFNSALGPYKGGLRFHPSV 86


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
 Frame = -3

Query: 807 WVWPKNPFK*PRASNVVF---PGWAI-PLEIKGEMANHNMDPFSHPVRFNKWINLNIL*P 640
           W+WPKN     R  N +F    G  I PL    +   +N +P + P     W+  N    
Sbjct: 363 WIWPKN-----RVVNQLFGYNSGLGILPLTFDWQQVVYNSNPLASP----WWVICNTFGS 413

Query: 639 LISAFPLLPNHYNYCCVWANESTFKILLRMWVHEAPGIQ*FITDVPNTDHSALH 478
           ++  F ++     Y  VW   S +  +L     +  G+    + V N+D+S  H
Sbjct: 414 VVLIFWIVVPILYYKGVWF--SNYLPMLSSSTFDHTGVSYNSSRVLNSDYSFNH 465


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 34  NYMKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTKNYE 204
           N+   +  +       L +SL   Q    + + +I +L SQI+ LK  L+   K Y+
Sbjct: 555 NHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKKYQ 611


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 31  INYMKTICKERNALRTKLNTSLEKLQYVHHNHELE-IEKLTSQINSLKTDLDSVTKNYEY 207
           IN  K   K    +      + +KLQ    NHELE IEK+  ++    T++D V+ +  +
Sbjct: 753 INSPKLQSKNNQTVEAVNTETSDKLQEKEANHELENIEKIEEKL----TEVDKVSLSDAF 808

Query: 208 AQKDI 222
             ++I
Sbjct: 809 PDQEI 813


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 4   QQLLKSRKSINYMKTICK-ERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQIN 162
           Q+  K++K+ N  K + K + N      +  L+    V  N+ L IEKLTS +N
Sbjct: 58  QRKKKTKKATNSRKPLSKFQSNTEEVNEDPILKPSLSVWENNRLLIEKLTSILN 111


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +1

Query: 82  LNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTKNY-EYAQKDICEHISVMDNLLI 258
           +  +++ ++ + H  E  +EK    +N+    +D   K+Y E     I   I VMD L  
Sbjct: 55  VGANVDDIELIQHEMESHLEKKLITVNTETMSVDKREKSYLEGGIFAITSRILVMDLLTK 114

Query: 259 YVIIIK-SDLNL*HYNMLIASATALYQVLHYQ 351
            +   K + + L H + ++++ T  + +  Y+
Sbjct: 115 IIPTEKITGIVLLHADRVVSTGTVAFIMRLYR 146


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 91  SLEKLQYVH--HNHELEIEKLTSQINSLKTDLDSVTKNY 201
           S ++ QY+   HN  +    L ++INSLK ++     NY
Sbjct: 236 SRDRKQYIKNFHNESVNNVDLINKINSLKEEVSQNVSNY 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,043,372
Number of Sequences: 5004
Number of extensions: 94066
Number of successful extensions: 267
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)