Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30696
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 31 0.93
01_01_0472 - 3473096-3474288,3474833-3474938 30 2.1
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002 29 3.7
03_06_0676 - 35460281-35460648,35462097-35462382 29 3.7
03_03_0182 - 15190713-15191114,15191247-15191315 29 3.7
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 29 3.7
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 29 4.9
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 29 6.5
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 28 8.6
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 8.6
05_06_0016 + 24958681-24958872,24959390-24959472,24959534-249596... 28 8.6
>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 31.5 bits (68), Expect = 0.93
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +1
Query: 16 KSRKSINYMKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTK 195
K + ++ +++I +E K+N + L + LE+E L ++ SL S +
Sbjct: 934 KEQSLLSELESIFQEHTEQEEKINRAHFMLNKIEKEKTLEVENLEREVMSLTAQASSTQE 993
Query: 196 NYEYAQKDICEHISVM 243
E A + +SV+
Sbjct: 994 ERENATVEAIREVSVL 1009
>01_01_0472 - 3473096-3474288,3474833-3474938
Length = 432
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 58 ERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTK 195
E +L+ + EKL HE EI L I +LK+ L+S+ K
Sbjct: 362 EAEKYNQELSHATEKLSEEKFRHEAEILALNQAIENLKSKLESIAK 407
>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
Length = 877
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 70 LRTKLNTSLEKLQYVHHNHELEIEK-LTSQINSLKTDLDSVTKNYEYAQKDICEHISVMD 246
+ K+ E+ H+H+LEIE S L D++S E + D+C ++ +D
Sbjct: 808 MNKKMKVEKEEANTSDHDHKLEIESGAPSSCFDLNLDMESDQAADELSSGDVC-LLTAVD 866
Query: 247 NLLIY 261
+L++
Sbjct: 867 RVLLF 871
>03_06_0676 - 35460281-35460648,35462097-35462382
Length = 217
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +1
Query: 16 KSRKSINYMKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTK 195
K KS + +K + +E KLN S++KL+ +HE ++ + + +N+L+ + +
Sbjct: 142 KEEKSSSEIKKLHQEI----AKLNESMKKLKSESEDHERKVLEAEAHVNALQKQSEELLL 197
Query: 196 NYEYAQKD 219
Y+ +D
Sbjct: 198 EYDRLLED 205
>03_03_0182 - 15190713-15191114,15191247-15191315
Length = 156
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = -1
Query: 452 EYFNNVCCKQRFNYIVYNGLTGRNRILILTI 360
E+FNN + R +Y+V+N L ++R+L+ T+
Sbjct: 115 EFFNNF--QYRVDYVVHNALINQSRVLVNTL 143
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Frame = +1
Query: 16 KSRKSINYMKTICKERNALRTKL--NTSLEK---LQYVHHNHE---LEIEKLTSQINSLK 171
+ RK+ + + K R L+ +L +TSL+ ++ HH+H+ +E+EK++ + + K
Sbjct: 724 QKRKADHASRDYNKRRKVLQRELGLSTSLDMVAVMENTHHSHDNRVIELEKMSRKKDEEK 783
Query: 172 TDLDSVTKNYEYA 210
T D + K+ A
Sbjct: 784 TKHDEIVKHAHLA 796
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +1
Query: 1 TQQLLKSRKSINYMK-TICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTD 177
T+++ + + +N +K T NA+ ++L +E L + + EL I++L +INSLK
Sbjct: 365 TKEIQMANEKLNELKQTKVNLENAV-SELKKEVENLTEQNRSSELLIQELRDEINSLKDS 423
Query: 178 LDSVTKNYEYAQKDICE 228
+ + + + I +
Sbjct: 424 KNELQNEIQSLRSTISQ 440
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 40 MKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKL 147
+K IC +R+ RT+L + E+L+ + +E+ + +L
Sbjct: 489 LKVICNQRDRFRTRLRETEEELRRLKEKYEMLVVEL 524
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KSRKSINYMKTICKERNA-LRTKLNTSLEKL-QYVHHNHELEIEKLTSQINSLKTDLDSV 189
++RK Y++ +E N LR K E Q E E+E L +++++ + D+ +
Sbjct: 471 RARKQAEYLRKCLEEHNLELRVKAANEAETACQQRLSIAEAELEDLRAKVDASERDVMKL 530
Query: 190 TKNYEYAQKDICEHISVMDNL 252
++ + ++ HIS ++ +
Sbjct: 531 KESIRIKEAEVDGHISEIETI 551
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +1
Query: 16 KSRKSINYMKTICKERNAL-RTKLNTSLEKLQYVH-HNHELE--IEKLTSQINSLKTDLD 183
K+ + + + C++ N+L T+L E + + H +LE IE + QIN+L+T+L
Sbjct: 775 KNMEELTSKLSACEKSNSLTETQLKCMAESYKSLELHKLKLESEIEVMHRQINTLRTELA 834
Query: 184 SVTKNYE 204
+N++
Sbjct: 835 DERQNHQ 841
>05_06_0016 +
24958681-24958872,24959390-24959472,24959534-24959621,
24960250-24960468,24960958-24961692,24961780-24962124,
24962196-24962411,24962551-24962847
Length = 724
Score = 28.3 bits (60), Expect = 8.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 674 NLTGWEKGSMLWFAISPFI 730
N++GWEK S L+ ++ PF+
Sbjct: 80 NISGWEKTSFLFMSLEPFM 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,174,907
Number of Sequences: 37544
Number of extensions: 579376
Number of successful extensions: 1324
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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