Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30696
         (887 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    26   1.3  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   9.4  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   9.4  

>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 570 KWTHWPKHNNNYNDW 614
           KW +W K   NY  W
Sbjct: 266 KWNNWTKQRRNYGTW 280


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 632 DIRGYKIFKLIHLLNLTGWEKGSM 703
           D+RG+K+ K + L + T  E+GS+
Sbjct: 536 DVRGWKLPKDVRLADPTFHERGSI 559


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 849  GPVTINNLIFPWGNWVWPKNPFK*PRASNVVFPG 748
            GP++    I  +G+WV P +P      +N+ F G
Sbjct: 1933 GPLSTGVTIAEYGHWVAPPSPMV---RANITFGG 1963


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,029,522
Number of Sequences: 2352
Number of extensions: 23933
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95507181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)