Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30696
(887 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 35 0.089
Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical pr... 34 0.12
X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic int... 34 0.12
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 33 0.27
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 33 0.27
AL132904-24|CAC35834.2| 459|Caenorhabditis elegans Hypothetical... 31 1.1
AF067622-2|AAK68367.1| 651|Caenorhabditis elegans Hypothetical ... 31 1.1
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden... 31 1.5
Z75547-11|CAA99905.4| 394|Caenorhabditis elegans Hypothetical p... 30 2.5
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 29 3.4
U64833-5|AAK95860.1| 402|Caenorhabditis elegans Hypothetical pr... 29 3.4
U64861-1|AAB04993.1| 158|Caenorhabditis elegans Cytidine deamin... 29 5.9
AF098995-1|AAR30204.1| 634|Caenorhabditis elegans Na/h exchange... 28 7.8
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 28 7.8
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 34.7 bits (76), Expect = 0.089
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +1
Query: 55 KERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTKNYEYAQKDICEHI 234
+++NAL ++ L KL+ + E EK QI S++T L K EY + C H+
Sbjct: 521 QDKNALNFLVSGELAKLREKAKKNNAEGEKAEMQIKSIQTGL---AKMLEYCESARCRHV 577
Query: 235 SV 240
S+
Sbjct: 578 SI 579
>Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/71 (29%), Positives = 39/71 (54%)
Frame = +1
Query: 79 KLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTKNYEYAQKDICEHISVMDNLLI 258
++ T+ ++ +HE E EK +I +K LD + K +E AQK E +D LL+
Sbjct: 124 EITTATNVVKETGKDHE-EAEK---EIGKIKDQLDELRKKFEEAQKGRAEDRLKIDELLV 179
Query: 259 YVIIIKSDLNL 291
+ +++++NL
Sbjct: 180 TLSNLEAEINL 190
>Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/71 (29%), Positives = 39/71 (54%)
Frame = +1
Query: 79 KLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTKNYEYAQKDICEHISVMDNLLI 258
++ T+ ++ +HE E EK +I +K LD + K +E AQK E +D LL+
Sbjct: 124 EITTATNVVKETGKDHE-EAEK---EIGKIKDQLDELRKKFEEAQKGRAEDRLKIDELLV 179
Query: 259 YVIIIKSDLNL 291
+ +++++NL
Sbjct: 180 TLSNLEAEINL 190
>X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/71 (29%), Positives = 39/71 (54%)
Frame = +1
Query: 79 KLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTKNYEYAQKDICEHISVMDNLLI 258
++ T+ ++ +HE E EK +I +K LD + K +E AQK E +D LL+
Sbjct: 124 EITTATNVVKETGKDHE-EAEK---EIGKIKDQLDELRKKFEEAQKGRAEDRLKIDELLV 179
Query: 259 YVIIIKSDLNL 291
+ +++++NL
Sbjct: 180 TLSNLEAEINL 190
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 33.1 bits (72), Expect = 0.27
Identities = 22/78 (28%), Positives = 43/78 (55%)
Frame = +1
Query: 1 TQQLLKSRKSINYMKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDL 180
T++L SR+ + ++ + L + T E ++ +H + EIEKLT+Q LK+
Sbjct: 598 TRELESSRRRMEQLQE--DQTKFLGSHDETKAEMMKDLHEAQD-EIEKLTNQAGQLKSKN 654
Query: 181 DSVTKNYEYAQKDICEHI 234
+++T E +Q ++CE +
Sbjct: 655 ETLTTELEDSQ-NLCERL 671
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 33.1 bits (72), Expect = 0.27
Identities = 22/78 (28%), Positives = 43/78 (55%)
Frame = +1
Query: 1 TQQLLKSRKSINYMKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDL 180
T++L SR+ + ++ + L + T E ++ +H + EIEKLT+Q LK+
Sbjct: 598 TRELESSRRRMEQLQE--DQTKFLGSHDETKAEMMKDLHEAQD-EIEKLTNQAGQLKSKN 654
Query: 181 DSVTKNYEYAQKDICEHI 234
+++T E +Q ++CE +
Sbjct: 655 ETLTTELEDSQ-NLCERL 671
>AL132904-24|CAC35834.2| 459|Caenorhabditis elegans Hypothetical
protein Y111B2A.4 protein.
Length = 459
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +1
Query: 19 SRKSINYMKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTKN 198
S I +KT KE T+LN E + H + L +I+SLK +L +
Sbjct: 288 SDAQIEDLKTQNKELANAYTELNEEFEGFKEQHTATQNANNDLNRRIDSLKANLIEYEER 347
Query: 199 YEYAQKDICEHISVMDNL 252
YE +K+ E S + L
Sbjct: 348 YEICKKESAETASQLIKL 365
>AF067622-2|AAK68367.1| 651|Caenorhabditis elegans Hypothetical
protein F33E11.3 protein.
Length = 651
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 133 EIEKLTSQINSLKTDLDSVTKNYEYAQKDICEHISVM 243
E+E ++ Q + L+ +L+SV + YE D+ EH++ +
Sbjct: 591 ELESVSKQNHRLEDELESVRRGYESQLGDLSEHLATL 627
>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence
of males (increasedx chromosome loss) protein 1, isoform
a protein.
Length = 1281
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +1
Query: 16 KSRKSINYMKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTK 195
+S++ IN K A R+K + + H E++K+T +++ +TDL +
Sbjct: 249 ESKEEINAQKKTIASLEATRSKEEAKIAAVHQEHRKALREVQKMTRKLDQKETDLAEKQQ 308
Query: 196 N 198
N
Sbjct: 309 N 309
>Z75547-11|CAA99905.4| 394|Caenorhabditis elegans Hypothetical
protein R11D1.10a protein.
Length = 394
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 258 LCNNNKERFESLTLQYANCKCHCSISGSPLPDHSNSQNQ 374
+CNN ++ ES A K +I+ +PLPD+SN N+
Sbjct: 51 VCNNCYQKLES-----AKMKPSATITSTPLPDNSNKSNK 84
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 49 ICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTKN 198
I KE++ + ++ K+Q N IEKL S++ +LKT+L+ TKN
Sbjct: 313 ILKEQDEFQDEIRQEFLKIQ---ENENKLIEKLMSELKTLKTELNE-TKN 358
>U64833-5|AAK95860.1| 402|Caenorhabditis elegans Hypothetical
protein B0507.10 protein.
Length = 402
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 16 KSRKSINYMKTICKERNALRTKLNT-SLEKLQYVHHNHELEIEKLTSQINSLKTDLD 183
K ++ +N +E AL+ +LN + EKL + ++++E+EK ++ L+ +L+
Sbjct: 56 KKKEILNQRAKQIEEMEALQERLNAITREKLNVRNDSNKMEVEKRKFELEKLQKELE 112
>U64861-1|AAB04993.1| 158|Caenorhabditis elegans Cytidine deaminase
protein 1 protein.
Length = 158
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 19 SRKSINYMKTICKERNALRTKLNTSLEKLQYVHHNHELE 135
+ ++ +Y TIC ER+A+ T L K +Y+ ELE
Sbjct: 51 NHENASYGATICAERSAIVTALTKGHRKFKYIVVATELE 89
>AF098995-1|AAR30204.1| 634|Caenorhabditis elegans Na/h exchanger
protein 6, isoform b protein.
Length = 634
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/27 (33%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = -1
Query: 545 YMKPLAYN--NLSQMSRTQIIQRYTHI 471
Y++P+ N N+ QM +T+++++Y H+
Sbjct: 509 YLRPVLVNKNNMKQMDKTKLVRKYKHL 535
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 16 KSRKSINYMKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLD-SVT 192
K + + KT C + A K + E+ ++ + + ++EK+ +I LK DLD
Sbjct: 77 KREQRDKFYKTHCLQWTA---KAQGADEETEFQKNLADNDVEKVRQRIGELKKDLDEKAR 133
Query: 193 KNYEYAQKDICEHISVM 243
KN E + D + + M
Sbjct: 134 KNVEMGEDDCYKLVKPM 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,318,366
Number of Sequences: 27780
Number of extensions: 536964
Number of successful extensions: 1337
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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