Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30696
         (887 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30380.1 68415.m03697 expressed protein contains Pfam profile...    35   0.083
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai...    29   4.1  
At5g51800.1 68418.m06423 expressed protein                             28   7.2  
At2g38070.1 68415.m04673 expressed protein  and genscan                28   7.2  
At3g47270.1 68416.m05135 hypothetical protein similar to At2g049...    28   9.5  
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila...    28   9.5  

>At2g30380.1 68415.m03697 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641);
           expression supported by MPSS
          Length = 519

 Score = 34.7 bits (76), Expect = 0.083
 Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
 Frame = +1

Query: 37  YMKTICKERNALRTKLNTS-LEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTKNYE 204
           Y+KTI  + NA +T++  S L++L+Y    +E  +EKL +Q+ + ++++ S+ K  E
Sbjct: 126 YLKTI--QLNAKKTEIAASCLDRLRYEIEVNEKHLEKLKAQVRAKESEIHSLIKKQE 180


>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 442

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = +1

Query: 22  RKSINYMKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSV--TK 195
           R ++  +K IC+ +      +NT    L     +H L+++ +  +  +L  +L +V  T 
Sbjct: 329 RYALERLKAICESKLCEGVAINTVATTLALAEQHHCLQLKAVCLKFVALPENLKAVMQTD 388

Query: 196 NYEYAQKDICEHISVMDNLLIYV 264
            ++Y  K+ C   S++  LL YV
Sbjct: 389 GFDYL-KESCP--SLLTELLQYV 408


>At5g51800.1 68418.m06423 expressed protein
          Length = 972

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 538 SPWHTIIYHRCPEHRSFSATPIFFPSSS 455
           +P  ++++H    H+SF  TPIF P+ S
Sbjct: 29  APNPSLLHHHHHHHQSFLPTPIFIPTVS 56


>At2g38070.1 68415.m04673 expressed protein  and genscan
          Length = 619

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 58  ERNALRTKLNTS-LEKLQYVHHNHELEIEKLTSQINSLKTDLDSVTKNYEYAQKD 219
           +R++   KL+ S + ++  +    + E + L S  NSL+ D  SV  NYE   ++
Sbjct: 421 DRSSSTRKLSASVMAEIDELKLTQDREAKDLVSHSNSLRDDCCSVENNYEMGVRE 475


>At3g47270.1 68416.m05135 hypothetical protein similar to At2g04970,
           At2g15200, At1g32830, At2g14140, At3g30450, At4g03990,
           At5g34895, At2g02200
          Length = 671

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 118 HNHELEIEKLTSQINSLKTDL----DSVTKNYEYAQKDICE 228
           HNHE E   L SQ N    DL    D V K Y  ++KD C+
Sbjct: 182 HNHEYE--HLVSQKNPEDKDLLDVFDLVIKGYRMSKKDWCQ 220


>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 406

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +1

Query: 22  RKSINYMKTICKERNALRTKLNTSLEKLQYVHHNHELEIEKLTSQINSLKTDLDSV--TK 195
           R ++  ++TIC+ +      +NT    L     +H  +++    +  +L  +L +V  T 
Sbjct: 293 RYALERLRTICESKLCEGISINTVATTLALAEQHHCFQLKAACLKFIALPENLKAVMETD 352

Query: 196 NYEYAQKDICEHISVMDNLLIYV 264
            ++Y  K+ C   S++  LL YV
Sbjct: 353 GFDYL-KESCP--SLLSELLEYV 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,851,046
Number of Sequences: 28952
Number of extensions: 489664
Number of successful extensions: 1260
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)