Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30695
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.06c |swi1||replication fork protection complex subunit S...    28   1.1  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   2.0  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   4.5  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   4.5  

>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 598 FEKRYCDNGCI 630
           +E RYCDNGCI
Sbjct: 561 YESRYCDNGCI 571


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 366 HYLLFTVTWIVLFLGV*LGWIVTG 295
           +Y+  T++WI+ F+G+ LG  V G
Sbjct: 417 NYIGITISWIITFIGIALGPAVFG 440


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 554 IFPQKYSSILDFEDRNKSSE 495
           +F QKY  I+D+E+ N ++E
Sbjct: 848 LFEQKYPGIVDYEEPNSNAE 867


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 497 QKIY-YGLRNLIWNYISGE-ISVILFTIVLCEL 589
           QK Y YG+    W Y SG  + ++LFT++  EL
Sbjct: 77  QKTYQYGVSGAFW-YASGACVQILLFTVLAIEL 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,435
Number of Sequences: 5004
Number of extensions: 46530
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)