Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30695
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27204| Best HMM Match : RVT_1 (HMM E-Value=0.00085)                 30   1.6  
SB_47300| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_24722| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_27204| Best HMM Match : RVT_1 (HMM E-Value=0.00085)
          Length = 646

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 408 FSLVSRKICIRSFKHYLL--FTVTWIVLFLGV*LG 310
           F  VS KI  R  K Y +  + + WIV FLG  LG
Sbjct: 494 FDSVSHKILCRKLKSYDINPYVINWIVSFLGTVLG 528


>SB_47300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 250 RSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNRRLCGM 137
           + + G+    +GGV    +GG+  +C+G V  +R+ G+
Sbjct: 52  KRIGGVYEKHIGGVYEKRIGGVYEKCIGGVYEKRIGGV 89


>SB_24722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 539 ISGEISVILFTIVLCELDNCLKNDIVITVVYLKAIRIVDVF 661
           +S E+S+++  I+  +  NC+  DI    + +K  R++  F
Sbjct: 203 LSSEVSIVIMLIITADRLNCIVFDIRARPLGIKPARVICAF 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,387,668
Number of Sequences: 59808
Number of extensions: 336245
Number of successful extensions: 896
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)