Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30695
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    36   5e-04
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 1   GYHAYGDHLPTPPPVPAAIQAALE 72
           G+   G H+PT PP+P  IQ ALE
Sbjct: 95  GFQVQGSHIPTAPPIPPEIQRALE 118


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 593 NCLKNDIVITVVYLKAIRIVDVFRHIN 673
           NC  NDI++TV     +   ++  HIN
Sbjct: 245 NCKLNDILLTVRPHLELTFENILSHIN 271


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 593 NCLKNDIVITVVYLKAIRIVDVFRHIN 673
           NC  NDI++TV     +   ++  HIN
Sbjct: 245 NCKLNDILLTVRPHLELTFENILSHIN 271


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 491  DLQKIYYGLRNLIWNYISGEISVILFTIVLCEL 589
            D  KI+    NL+   ++  + +I+  IV+C L
Sbjct: 1576 DPMKIFMANLNLVVPVVAAILVIIVAVIVICVL 1608


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 512 GLRNLIWNYISGEISVILFTIVL--CELDNCLKND 610
           G  N  W+Y+SGE +  + TI++  C  ++ + N+
Sbjct: 280 GTLNAPWSYMSGEKANEVATILVDDCGCNSTMLNE 314


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 512 GLRNLIWNYISGEISVILFTIVL--CELDNCLKND 610
           G  N  W+Y+SGE +  + TI++  C  ++ + N+
Sbjct: 280 GTLNAPWSYMSGEKANEVATILVDDCGCNSTMLNE 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,345
Number of Sequences: 438
Number of extensions: 3523
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)