Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30695
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01220.1 68414.m00036 GHMP kinase-related contains similarity...    31   0.98 
At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr...    28   6.9  
At5g33806.1 68418.m04019 hypothetical protein                          28   6.9  

>At1g01220.1 68414.m00036 GHMP kinase-related contains similarity to
           L-fucose kinase [Homo sapiens] gi|21212956|emb|CAD29647
          Length = 1055

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +2

Query: 488 YDLQKIYYGLRNLIWNYISGEISVILFTIVLCELDNCLKNDIVITVVYLKA 640
           YDLQ +++G  + + +++SG+ S I+    LC +     +DI  + V L +
Sbjct: 349 YDLQFLHFGTSSEVLDHLSGDASGIVGRRHLCSIPATTVSDIAASSVILSS 399


>At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 366

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 1   GYHAYGDHLPTPPPVPAAIQAALESKCQRGSRA 99
           G + YG  +P PPP P  +       C  GS A
Sbjct: 282 GGNGYGGLVPPPPPPPMMVPPMGNRDCTNGSSA 314


>At5g33806.1 68418.m04019 hypothetical protein
          Length = 336

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 22  HLPTPPPVPAAIQA-ALESKCQRGSR 96
           H+P PPP+P    A A+ S+C+  S+
Sbjct: 77  HVPPPPPIPQGTSARAIASRCKTLSK 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,043,901
Number of Sequences: 28952
Number of extensions: 241071
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)