Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30693
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    92   7e-20
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   3.8  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   6.7  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 91.9 bits (218), Expect = 7e-20
 Identities = 44/90 (48%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
 Frame = +3

Query: 255 GVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIA 434
           G ++T AH+SLI  N     + L++TI L F F   QAYEY  A FTI+D +YG++F+ A
Sbjct: 153 GASLTYAHYSLIARNRENALKGLYMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFA 212

Query: 435 TGFHGIHVIIGTLFLLIC----YIRHLNNT 512
           TG HGIH+I+GT+ LL+     Y  HL NT
Sbjct: 213 TGLHGIHIIVGTILLLVATYNIYTYHLTNT 242



 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +1

Query: 10  RDISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PP 189
           RD+S E    G HT  V KGL+ G                    H  LSP  E+G + PP
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPP 128

Query: 190 SRITP--FNPFQIPLLNTIILIRSG 258
             I     +P ++PLLNT+IL+ SG
Sbjct: 129 VGIADKTIDPLEVPLLNTVILLTSG 153



 Score = 28.7 bits (61), Expect = 0.72
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 491 YSTFK*HFSKNHHFGFEAAA*YWTF 565
           Y+ +  H +  HH GFE    YW F
Sbjct: 232 YNIYTYHLTNTHHNGFECGIYYWHF 256


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 402 DRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNNTFLKI 524
           +R YG+   IA  F  + VI    +L+ CY+   ++ ++ I
Sbjct: 94  ERRYGTLCTIAMFFGFLEVIPAIAYLIACYVAESDDVYVGI 134


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 288 IENNFSQTKQRLFLTILLGFYFTILQAYE 374
           +  ++S T  RL++ ++ G Y + L++Y+
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,718
Number of Sequences: 5004
Number of extensions: 39144
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)