Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30693
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0098 + 31641760-31642386,31643173-31644114                       32   0.43 
04_02_0006 + 8455219-8457469,8457560-8457924                           29   3.0  
12_01_0189 + 1397068-1397241,1397713-1397804,1398456-1398546,139...    27   9.2  
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    27   9.2  

>03_06_0098 + 31641760-31642386,31643173-31644114
          Length = 522

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
 Frame = +3

Query: 273 AHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYIEASFTIA---DRIYGSTFFIATGF 443
           A   LI+ +  +  + L +  LLGF   +L   EY+EA   +    + +  S   + +G 
Sbjct: 192 AKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAVPWVGEEEENVVSSVQHLQSGN 251

Query: 444 HGIHVIIGTLFLLICYIRHLNNTFLKIITLDLKLQLDIGHFGRCSMIISL 593
           +G+  I+  +   +      N+TF+ II L LK   D G     S+++ L
Sbjct: 252 YGVSPILKRVCSDL--TSPPNDTFVHIIELVLKSGEDRGRREMKSLVLKL 299


>04_02_0006 + 8455219-8457469,8457560-8457924
          Length = 871

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 607 NKWKCKEIIILHLPKCPISSCSFKSKVMIFRKVL 506
           NK  C  I IL+LP CP S    K+   +  KV+
Sbjct: 448 NKGLCANIHILNLPICPSSPAKTKNNKRLLLKVI 481


>12_01_0189 +
           1397068-1397241,1397713-1397804,1398456-1398546,
           1398931-1399052,1399142-1399289,1399596-1399665,
           1400465-1400517,1400678-1400822,1401308-1401426,
           1401480-1401527,1401528-1401599,1401902-1402024,
           1402025-1402131,1402437-1402547,1402585-1402777,
           1402959-1403129,1403548-1403673
          Length = 654

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 275 SSLIDRK*LLTNKTKIIFNYFIRILFYYFTS 367
           SSL  R+  + +  K++ NY+  ILF  F S
Sbjct: 393 SSLASRRPRILDTQKVLINYYAMILFQVFVS 423


>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 273 AHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYIEASFTIADR 407
           +HH  ++    Q   +  L I+   +F++LQ Y Y  A ++ ADR
Sbjct: 249 SHHFWLDVEHIQEAIQNVLVIIEMVFFSVLQQYAYHVAPYSGADR 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,424,284
Number of Sequences: 37544
Number of extensions: 202571
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)