Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30693
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    99   3e-21
At3g44930.1 68416.m04840 cation/hydrogen exchanger, putative (CH...    31   0.62 
At5g19130.2 68418.m02277 GPI transamidase component family prote...    29   3.3  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    29   3.3  
At2g06090.1 68415.m00668 self-incompatibility protein-related si...    29   3.3  
At4g02900.1 68417.m00392 early-responsive to dehydration protein...    27   7.7  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 46/81 (56%), Positives = 55/81 (67%)
 Frame = +3

Query: 255 GVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIA 434
           G  VT AHH+++     +    L  T+LL   FT  Q  EY +A FTI+D IYGSTFF+A
Sbjct: 144 GAAVTWAHHAILAGKEKRAVYALVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLA 203

Query: 435 TGFHGIHVIIGTLFLLICYIR 497
           TGFHG HVIIGTLFL+IC IR
Sbjct: 204 TGFHGFHVIIGTLFLIICGIR 224



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 32/83 (38%), Positives = 40/83 (48%)
 Frame = +1

Query: 10  RDISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PP 189
           RD+ RE T +G HT +V  G R G                    H  L+P +EIG I PP
Sbjct: 62  RDVLRESTLEGHHTKVVQLGPRYGSILFIVSEVMFFFAFFWASSHSSLAPAVEIGGIWPP 121

Query: 190 SRITPFNPFQIPLLNTIILIRSG 258
             I   +P++IP LNT IL  SG
Sbjct: 122 KGIEVLDPWEIPFLNTPILPSSG 144



 Score = 34.7 bits (76), Expect = 0.050
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +2

Query: 509 HFSKNHHFGFEAAA*YWTF 565
           H +K HH GFEAAA YW F
Sbjct: 229 HLTKEHHVGFEAAAWYWHF 247


>At3g44930.1 68416.m04840 cation/hydrogen exchanger, putative
           (CHX10) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 731

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 492 IRHLNNTFLKIITLDLKLQLDIGHFGRCSMIISLHFHLLDEGI 620
           IRHLN + L      + + +D G F R S++ S   +++D G+
Sbjct: 547 IRHLNQSLLDRAPCSIGILVDRGQFSRKSIVTSKKRYIIDVGV 589


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 360 LQAYEYIEASFTIADRIYGSTFFIATGFHG 449
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 352 IPAADYLEGSATLASSLYSQALGIPTGPHG 381


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 360 LQAYEYIEASFTIADRIYGSTFFIATGFHG 449
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 355 IPAADYLEGSATLASSLYSQALGIPTGPHG 384


>At2g06090.1 68415.m00668 self-incompatibility protein-related
           similar to S1 self-incompatibility protein [Papaver
           rhoeas] GI:452430
          Length = 135

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 339 LGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGI 452
           LG + T+ ++YEY   +F   D ++G T F  T  HG+
Sbjct: 53  LGIH-TVARSYEY---NFKFEDSVFGRTEFFCTLMHGV 86


>At4g02900.1 68417.m00392 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 785

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 420 TFFIATGFHGIHVIIGTLFLLICYIRHLNNTFLKIITLDLKLQLDIGHFGRCSMIISLHF 599
           T+ +  G+ GI   I  +  L+ +  HL NTFL     D +  +D GH    +    + F
Sbjct: 515 TYIMVDGWAGIAAEILRVVPLVIF--HLKNTFLVKTEQDRQQAMDPGHLDFATSEPRIQF 572

Query: 600 HLL 608
           + L
Sbjct: 573 YFL 575


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,761,143
Number of Sequences: 28952
Number of extensions: 184494
Number of successful extensions: 332
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)