Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30692
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    28   1.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   1.9  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   2.5  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    27   4.4  
SPAC1610.01 ||SPAC17A5.17|conserved fungal protein|Schizosacchar...    27   4.4  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   4.4  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    26   7.8  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 247 VLRIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQ-DGFL 375
           +++  +Q    K  +KN K+KN   ++KPLL TE   CQ D FL
Sbjct: 144 LIKCIEQLIQIKVCMKNEKMKNLMEQLKPLLQTE---CQFDKFL 184


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
 Frame = -3

Query: 555  SLLPSSEAEAVRKDTLEEIAWRSSIWVVVNITRIFIRSIATVLFAVTEKTAFNASRVAAS 376
            ++  S   EA   D    I + S  W  +  T +  RS++T  ++     ++N S +   
Sbjct: 1349 AICASFAVEAKINDWSYYIDFGSESWERIRNTPLK-RSLSTTFYSFL--ISYNDSFIKKH 1405

Query: 375  EEAILTEWFFSV-----QERLYFTLLVLELTIFHSI 283
            EE +LT WF S+          FT+L+L+  + + I
Sbjct: 1406 EEKVLTVWFESLGALDEDHAAQFTILLLQKNLKNPI 1441


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 532 RSSQEGHTRGNRMAELYLGRCQYHKNFHQIHRHS 431
           RS   G  R  R+A + +  C++H N   +  HS
Sbjct: 134 RSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHS 167


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 12  VSLLWPRASCSPARLLMVTD 71
           V+ +W R +CSP+RL  +T+
Sbjct: 211 VTQVWERGTCSPSRLSFLTE 230


>SPAC1610.01 ||SPAC17A5.17|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 244 FVLRIEKQTCDWKDAVKNCKLKNKERKIKPLLYTE 348
           F+L  E+Q   WK   +   L  K+ K KP +Y +
Sbjct: 62  FILFDEEQNSGWKIPYETITLHAKQSKDKPYVYVQ 96


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 703 VSNNQGPPYFCLPHQSY 753
           VS N+   YFCLP +SY
Sbjct: 214 VSENELADYFCLPEESY 230


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 294 FHSIFPIAGLFLNTKNKPAGQRIACIPEAVHWM 196
           FH   P++         P GQRI C+  A  W+
Sbjct: 534 FHPFDPVSKKITAYVEAPDGQRITCVKGAPLWV 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,727,431
Number of Sequences: 5004
Number of extensions: 84130
Number of successful extensions: 215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)