Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30692
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103 31 1.2
02_01_0733 - 5477110-5477421,5478146-5478166 30 2.0
12_02_0405 - 18635503-18635871,18636703-18636817,18636970-186377... 29 4.7
07_01_0498 + 3734498-3734976,3736176-3736800 29 4.7
11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600 29 6.2
09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037 29 6.2
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601... 29 6.2
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979... 29 6.2
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 28 8.2
>08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103
Length = 196
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGD-GSDENSCDIDND 477
CGD+ C G+FC G D S+++S D+ +D
Sbjct: 157 CGDTGCFADGIFCPGNGDSDPAASNDSSVDMHSD 190
>02_01_0733 - 5477110-5477421,5478146-5478166
Length = 110
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +1
Query: 184 LSRRHPVYCLGNTSYTLPGRFVLRIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQ 363
L+ PV Y + VLR+ ++ W +K+ K + R+ L Y C
Sbjct: 5 LNENVPVEFQEAHGYAAREKVVLRMRGRS--WTVRLKHTKGRRPRRERAVLRYGWHRFCA 62
Query: 364 DGFLACGDSTCIERGLFC--NGEKDCGDGSDEN 456
D LA GD TC R L +G D DG ++
Sbjct: 63 DNGLAVGD-TCFFRALRSAGSGAGDVDDGDGDH 94
>12_02_0405 -
18635503-18635871,18636703-18636817,18636970-18637721,
18638540-18638542
Length = 412
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +1
Query: 277 WKDAVKNCKLKNKERKIKPLLYTEEPLCQ--DGFL---ACGDSTCIERGLFCNGEKDCGD 441
W+D V + + + R+ KPL++ ++ + FL GD LF E+D D
Sbjct: 59 WRDVVDEVEPEVQRRRAKPLVFFKDGRYEPASAFLLHDVAGDCDVTSLSLFREEEED-DD 117
Query: 442 GSDENSCDIDNDPNRAPPCDFLECV 516
G D + N+ + C+ L C+
Sbjct: 118 GGDRDFFARYNNDDMVGSCNGLICL 142
>07_01_0498 + 3734498-3734976,3736176-3736800
Length = 367
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 621 ADLTINKHLDLYQRDFLNGKAAKNPGTGFE*SRATLFLSPPPKL 752
A LT +H R +NG+ A+ T F R +SPPP L
Sbjct: 273 AALTNGRHASCLHRAVVNGRVARRSLTFFLNPRLDRVVSPPPAL 316
>11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600
Length = 447
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = -1
Query: 419 LQKRPRSMQVESPQARKPS*QSGSSVYKRGFILRSLFLSLQFFTASFQSQVCFSIRRTNR 240
L + ++ +P +RK S + +++YKR + RSL L + + F V + R+++
Sbjct: 325 LDRLELDLRHNAPCSRKRSAVAMANLYKRDYSSRSLLLQFR-YKLDFDKSVDLFVHRSSK 383
Query: 239 P 237
P
Sbjct: 384 P 384
>09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037
Length = 438
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 668 FKRESGKKPRNGFRIIKGHLIFVSPTKVTPNYSWPVQRKIHPQGF 802
F ES KK + + GH+ ++ T VT + P + PQG+
Sbjct: 33 FNWESWKKQGGWYNFLHGHVDDIAATGVTHVWLPPPSHSVAPQGY 77
>06_03_0345 +
19758188-19758382,19759857-19759952,19760061-19760144,
19760504-19760573,19760934-19761838,19763661-19764287
Length = 658
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 307 KNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 480
+ +ER+ L E +G ++C ST G+K+ DG D+ D +P
Sbjct: 441 RGEERRGVDKLRCHEEFVTEGHISCSVSTDDSDSSTSKGDKNAKDGKDKGDKDKSEEP 498
>04_03_0809 +
19896801-19897170,19897265-19897513,19897850-19897900,
19898007-19898267,19898427-19898479,19898746-19898887,
19898972-19899226,19899616-19900640
Length = 801
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -3
Query: 462 TRIFIRSIATVLFAVTEKTAFNASRVAASEEAILTEWFFSVQERLYFTLLVLELTIFHSI 283
T++ + S+A +LF + F +V + I++ WF + + L+V E+TI +
Sbjct: 224 TQVVLISVA-ILFMLFSVQRFGTDKVGYTFAPIISVWFLLIAGIGLYNLVVHEITILKAF 282
Query: 282 FP 277
P
Sbjct: 283 NP 284
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 703 VSNNQGPPYFCLPHQSYT*LFLAGPKKNSPPRVHRKFP 816
+SNNQGPP F P L L+ P + SP R + P
Sbjct: 501 LSNNQGPPPFTQPVAQ---LSLSDPLQGSPAREEGEVP 535
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,076,014
Number of Sequences: 37544
Number of extensions: 629423
Number of successful extensions: 1690
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1689
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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