Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30692
(848 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 51 1e-06
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 50 2e-06
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 50 3e-06
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 49 4e-06
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 48 7e-06
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 48 1e-05
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 46 3e-05
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 46 4e-05
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 44 2e-04
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 44 2e-04
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 42 6e-04
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 42 6e-04
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 42 8e-04
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 41 0.001
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 41 0.001
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 40 0.002
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 40 0.003
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 40 0.003
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 39 0.004
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.006
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 38 0.014
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 37 0.018
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 37 0.024
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 36 0.031
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 36 0.031
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.055
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.096
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 34 0.13
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.68
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 31 0.89
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 31 0.89
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 31 0.89
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 30 2.7
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19) 30 2.7
SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36) 30 2.7
SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10) 29 3.6
SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23) 29 3.6
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 3.6
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71) 29 4.8
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 28 8.3
SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0) 28 8.3
SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 28 8.3
SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0) 28 8.3
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 51.2 bits (117), Expect = 1e-06
Identities = 25/83 (30%), Positives = 37/83 (44%)
Frame = +1
Query: 286 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 465
A+ N + + IKP C G C + CI + L+C+G+ C DGSDE C+
Sbjct: 67 AIANVSITTRSCAIKPTFSFPGHSCGSGEFQCDNGKCIRKNLYCDGDFACVDGSDETRCE 126
Query: 466 IDNDPNRAPPCDFLECVLPDCFC 534
P+ C EC++ C
Sbjct: 127 C---PSNMFLCPSGECIMGTQLC 146
Score = 36.7 bits (81), Expect = 0.024
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C C CI C+G+KDC D +DE +C
Sbjct: 127 CPSNMFLCPSGECIMGTQLCDGKKDCTDNTDEKNC 161
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/82 (34%), Positives = 35/82 (42%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVLPDCFCF 537
C+ C D C+ FCNGE DC DGSDE SC DN + C CV C
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSC--DNSCSSRHACADGTCVTWSLTC- 130
Query: 538 RGRQQ*FPGDFTRQKCSSNDSL 603
G G + C +D++
Sbjct: 131 NGVSDCQDGSDEPKLCGKHDTM 152
Score = 46.0 bits (104), Expect = 4e-05
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +1
Query: 376 ACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPP 495
AC D TC+ L CNG DC DGSDE +D R PP
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDEPKLCGKHDTMRPPP 156
Score = 36.3 bits (80), Expect = 0.031
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +1
Query: 289 VKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 468
V +L + ++PL C C + C+ + + C+G+ C D SDE +C
Sbjct: 15 VSRIRLTTESCHMQPLHAHPSHSCHGDQFQCLNGMCVGQEVRCDGDYACVDHSDERNCAC 74
Query: 469 DNDPNRAPPCDFLECVLPDCFC 534
+ + P +CV P FC
Sbjct: 75 RSAEFKCPDG---KCVHPSKFC 93
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/36 (52%), Positives = 21/36 (58%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 465
C+ C D C+ FCNGE DC DGSDE SCD
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSCD 109
Score = 41.5 bits (93), Expect = 8e-04
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +1
Query: 376 ACGDSTCIERGLFCNGEKDCGDGSDE 453
AC D TC+ L CNG DC DGSDE
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDE 142
Score = 37.5 bits (83), Expect = 0.014
Identities = 22/82 (26%), Positives = 35/82 (42%)
Frame = +1
Query: 289 VKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 468
V +L + ++PL C C + C+ + L C+G+ C D SDE +C
Sbjct: 15 VSRIRLTTESCHMQPLHAHPSHSCHGDQFQCLNGMCVGQELRCDGDYACVDHSDERNCAC 74
Query: 469 DNDPNRAPPCDFLECVLPDCFC 534
+ + P +CV P FC
Sbjct: 75 RSAEFKCPDG---KCVHPSKFC 93
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/73 (31%), Positives = 31/73 (42%)
Frame = +1
Query: 298 CKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND 477
C+ +N E + T C G CG+ CI C+ + DCGD SDEN+C
Sbjct: 168 CRCQNGEVLVNGQCKTLSGTCAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDENNCPYSTC 227
Query: 478 PNRAPPCDFLECV 516
CD C+
Sbjct: 228 NPSQFKCDNGRCI 240
Score = 34.7 bits (76), Expect = 0.096
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C C + CI C+ + DCGD SDE +C
Sbjct: 227 CNPSQFKCDNGRCISSKWRCDHDNDCGDMSDERNC 261
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 48.4 bits (110), Expect = 7e-06
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 352 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
P+CQ G C +CI+ G C+ DCGD SDEN+C
Sbjct: 2091 PMCQYGQFRCARGSCIDTGRVCDFTDDCGDNSDENNC 2127
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 352 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDN 474
P C G C D +CI + L C+ + DC DG DE SC N
Sbjct: 2244 PPCPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDEASCGTCN 2284
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 331 PLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
P T P C G C + CI C+ +KDC DGSDE +C
Sbjct: 2541 PPTSTPPPGCNSGEHRCSNGQCINAIQVCDFKKDCSDGSDEATC 2584
Score = 38.3 bits (85), Expect = 0.008
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 367 GFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
G++ C + CI++ C+ DCGD SDE C
Sbjct: 3207 GYVKCTNGGCIQKSKLCDFTDDCGDNSDEGRC 3238
Score = 35.1 bits (77), Expect = 0.073
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +1
Query: 355 LCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDF 504
+C C +C C+ DCGD SDE SC N NR CDF
Sbjct: 3619 VCTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDERSCSSYN--NR---CDF 3663
Score = 32.7 bits (71), Expect = 0.39
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 286 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDC--GDGSDENS 459
AV + KL+N KPL T C C CI + C+ + DC D SDE+
Sbjct: 4041 AVDDVKLEN----CKPLDVTRP--CNTDEFKCSRGGCIPKSYLCDYQADCMFNDLSDESK 4094
Query: 460 CD 465
CD
Sbjct: 4095 CD 4096
Score = 31.5 bits (68), Expect = 0.89
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 373 LACGDSTCIERGLFCNGEKDCGDGSDENSC 462
+A G + CI C+ K+C DGSDE +C
Sbjct: 3855 VAEGPNACILSTQVCDFSKNCKDGSDEKNC 3884
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 385 DSTCIERGLFCNGEKDCGDGSDENSC 462
D CI C+ DC DGSDE SC
Sbjct: 3435 DGKCIPLTSVCDFNVDCLDGSDERSC 3460
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 459
C C CI C+ E DC DGS+E +
Sbjct: 2783 CSSNQFRCDSGHCISSSSKCDFETDCCDGSEERN 2816
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVLPDCFC 534
C + C + C++RGL C+G+K C DGSDE C P+ C EC+ C
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGSDEKHCSC---PSNMFLCPSGECIPTTALC 238
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/89 (25%), Positives = 33/89 (37%)
Frame = +1
Query: 208 CLGNTSYTLPGRFVLRIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGD 387
C + LPG L ++ C+ VK L + ++ + C C
Sbjct: 170 CAVQPPFALPGHECLE-DEFGCENGQCVKRGLLCDGDKACLDGSDEKHCSCPSNMFLCPS 228
Query: 388 STCIERGLFCNGEKDCGDGSDENSCDIDN 474
CI CN E DC D +DE +C N
Sbjct: 229 GECIPTTALCNNENDCSDNADERNCQYAN 257
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 46.4 bits (105), Expect = 3e-05
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C G +C + CI R C+ + DCGDGSDE +C
Sbjct: 50 CNSGQFSCSNGRCISRSWVCDRDNDCGDGSDERNC 84
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLE 510
C+ +C + C+ L C+G DCGD SDE SC+ P C + E
Sbjct: 103 CRSWEFSCLNGRCVFYRLVCDGVDDCGDSSDEMSCNATATPFVPRSCHYWE 153
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLEC 513
C + C+ C+G+ DCGD SDE C P P D++ C
Sbjct: 156 CANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTC-PADWVRC 199
Score = 35.1 bits (77), Expect = 0.073
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE-NSCDIDNDPNRAPPCDFLECVLPDCFC 534
C C + CI C+G+ DCGD SDE SC + + C C+ C
Sbjct: 10 CPSNRFRCNNGRCIPMSWRCDGDNDCGDMSDEPPSCSGRSCNSGQFSCSNGRCISRSWVC 69
Query: 535 FR 540
R
Sbjct: 70 DR 71
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 46.0 bits (104), Expect = 4e-05
Identities = 21/59 (35%), Positives = 25/59 (42%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVLPDCFC 534
C+ G +C + CI C+ E DCGD SDE C P C CV D C
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDCGDNSDEARCPEVTCPAHEFTCPNGRCVSYDFLC 2267
Score = 46.0 bits (104), Expect = 4e-05
Identities = 22/63 (34%), Positives = 25/63 (39%)
Frame = +1
Query: 346 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVLPD 525
E C C TCI R C+ + DCGDGSDE C PN C C+
Sbjct: 2453 ERATCDVTQFRCKTGTCITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKCTSGHCIANS 2512
Query: 526 CFC 534
C
Sbjct: 2513 SVC 2515
Score = 42.7 bits (96), Expect = 4e-04
Identities = 21/53 (39%), Positives = 23/53 (43%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECV 516
C DG +C D CI R C+G DC D SDE P R C CV
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDCADASDEKGSGHRWCPQRLYQCINHVCV 3259
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 358 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPC-DFLECVLPDCF 531
C+ AC + CI+R C+GE DCGD SDE C +++ N C + C+
Sbjct: 1087 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 1146
Query: 532 C 534
C
Sbjct: 1147 C 1147
Score = 41.9 bits (94), Expect = 6e-04
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 468
C + C CI C+G+ DC DGSDE CD+
Sbjct: 2496 CPNHTFKCTSGHCIANSSVCDGDTDCADGSDEKDCDL 2532
Score = 41.5 bits (93), Expect = 8e-04
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE-NSCDI 468
C + C + CI R C+GE DCGDGSDE +SC +
Sbjct: 2926 CTNNDFMCDNYRCISRLWRCDGEDDCGDGSDEPDSCPV 2963
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 459
C AC C+ + C+G+ DC DGSDE+S
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDCHDGSDESS 2201
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 459
C AC + CI L C+G+ DCGD SDE +
Sbjct: 2370 CTGAQFACDNGRCISTRLLCDGDNDCGDNSDETT 2403
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVLPDCFC 534
C C + C+ R C+G DC DGSDE +C + C C+ D C
Sbjct: 3007 CAPYHFRCDNFRCVYRSRVCDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLC 3065
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C C + C R C+G DCGDGSDE C
Sbjct: 910 CSASMFRCANGQCKPRDWVCDGFDDCGDGSDEKGC 944
Score = 39.9 bits (89), Expect = 0.003
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSDENSC 462
C + CI + C+G KDC DGSDE++C
Sbjct: 95 CANGRCINKKWRCDGMKDCADGSDESTC 122
Score = 37.9 bits (84), Expect = 0.010
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 459
C C + CI + C+GE DCGD SDE S
Sbjct: 47 CPPTKFLCANGMCIPKSAVCDGENDCGDMSDEPS 80
Score = 37.9 bits (84), Expect = 0.010
Identities = 22/79 (27%), Positives = 27/79 (34%)
Frame = +1
Query: 349 EPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVLPDC 528
E C C + C+ C+GE DCGD SDE C C +P
Sbjct: 2245 EVTCPAHEFTCPNGRCVSYDFLCDGEDDCGDFSDELRCPPTTCVPGQVKCGSKNLCIPSS 2304
Query: 529 FCFRGRQQ*FPGDFTRQKC 585
+ G G RQ C
Sbjct: 2305 WLCDGSDDCGDGWDERQDC 2323
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +1
Query: 370 FLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVLPDCFC 534
F D CI C+GE DC DGSDE C C C+ C
Sbjct: 3133 FRCYSDRRCIPNQWKCDGESDCNDGSDEKGCPPKQCAKHQYRCASGRCISASWVC 3187
Score = 37.5 bits (83), Expect = 0.014
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 358 CQDGFLAC-GDSTCIERGLFCNGEKDCGDGSDEN 456
C +C S C+ C+GE DCGDGSDE+
Sbjct: 2414 CTQSEYSCRSTSRCVPLAFVCDGENDCGDGSDES 2447
Score = 37.5 bits (83), Expect = 0.014
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 459
C C CI R C+G+ DCGD SDE +
Sbjct: 3046 CTADQFRCPSGRCISRDWLCDGDNDCGDSSDEKA 3079
Score = 36.3 bits (80), Expect = 0.031
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSDENSC 462
C CI C+ DCGDGSDE C
Sbjct: 3175 CASGRCISASWVCDHVNDCGDGSDEQQC 3202
Score = 35.9 bits (79), Expect = 0.042
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 352 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDEN 456
P C G C + CI C+GE DC D SDE+
Sbjct: 823 PPCSAGKFTCKNGHCISLRWKCDGENDCVDNSDED 857
Score = 35.5 bits (78), Expect = 0.055
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +1
Query: 349 EPLCQ-DGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVLP- 522
E C+ D + G S CI C+G DCGD DE S +D D + C CV
Sbjct: 124 EGTCRPDEWHCIGTSRCIPLSRVCDGTNDCGDNYDEGSHCLDLDCKK-KNCS-QRCVQTP 181
Query: 523 ---DCFCFRG 543
+C CF G
Sbjct: 182 RGGECRCFPG 191
Score = 35.5 bits (78), Expect = 0.055
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 358 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENS 459
C G C CI C+GE DC DGSDENS
Sbjct: 3086 CPAGQARCATGRRCIPSEWRCDGESDCEDGSDENS 3120
Score = 32.7 bits (71), Expect = 0.39
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 388 STCIERGLFCNGEKDCGDGSDENSC 462
S CI C+ + DCGD SDE +C
Sbjct: 1058 SRCIPLRFVCDADDDCGDRSDERNC 1082
Score = 32.3 bits (70), Expect = 0.51
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +1
Query: 364 DGFLACGDSTCIERGLFCNGEKDCGDGSDEN-SCDIDNDPNRAPPCDFLECVLPD---CF 531
D + S CI + C+G DC D SDE C +D + C L +P+ C
Sbjct: 1130 DRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGCGLDQCHSNNGGCAQLCMDVPEGVQCS 1189
Query: 532 CFRG 543
C G
Sbjct: 1190 CRPG 1193
Score = 31.9 bits (69), Expect = 0.68
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Frame = +1
Query: 355 LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPP----CDFLECVL 519
+C+ G C D+ CI C+G C G DE++C N+ P CD CV
Sbjct: 2965 VCKPGTYQCADNRKCISVLEVCDGIPSCPAGDDESNC---GSVNQCAPYHFRCDNFRCVY 3021
Query: 520 PDCFC 534
C
Sbjct: 3022 RSRVC 3026
Score = 31.9 bits (69), Expect = 0.68
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE 453
C C + C++R C+ DCGD SDE
Sbjct: 3246 CPQRLYQCINHVCVDRRWLCDDMDDCGDYSDE 3277
Score = 31.9 bits (69), Expect = 0.68
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +1
Query: 283 DAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
D V +C K+ E + C+ C + C+ C+ DCGD SDE C
Sbjct: 3307 DGVYHCTDKSDEAPYRSC--PARVACRKDQFKCLNRRCVPVRAVCDSNDDCGDISDELQC 3364
Query: 463 DIDN 474
N
Sbjct: 3365 PSTN 3368
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Frame = +1
Query: 346 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDE-NSCDIDNDPNRAP--PCDFLECV 516
E P C C C+ C+G+ DC D SDE C N CD C+
Sbjct: 2325 ERP-CNVSEFRCTSGECVPASWRCDGDNDCTDKSDEPTDCQRSNATCTGAQFACDNGRCI 2383
Query: 517 LPDCFC 534
C
Sbjct: 2384 STRLLC 2389
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 355 LCQDGFLACGDSTCIERGLFCNGEKDCGDGSDE 453
+C++ C ++ CI + C+G C D SDE
Sbjct: 3286 ICRNSHFRCDNNKCIPKWNVCDGVYHCTDKSDE 3318
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 44.4 bits (100), Expect = 1e-04
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSDENSC 462
C CIE FC+G+KDCGDG DE C
Sbjct: 703 CSSGECIEVATFCDGKKDCGDGFDETHC 730
Score = 41.5 bits (93), Expect = 8e-04
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +1
Query: 286 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKD-CGDGSDENSC 462
A+++ ++ ++ P++ C D C + C+ + CNG +D C DGSDE+ C
Sbjct: 635 AIRDIQITTEDCLCTPVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRDSCVDGSDESGC 694
Query: 463 DIDNDPNRAPPCDFLECVLPDCFC 534
+ C EC+ FC
Sbjct: 695 TCGLHEFQ---CSSGECIEVATFC 715
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 44.0 bits (99), Expect = 2e-04
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 468
C C D TCI+R CNG+ DC D SDE C +
Sbjct: 4 CPGSKYECRDGTCIDRNEHCNGKIDCPDASDEKGCGL 40
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 355 LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPP 495
+C+D CG S CI + C+G+ DC G DE +C P PP
Sbjct: 42 VCRDDQFQCGTSRKCIRKSKICDGKSDCSGGEDEKNCVKPQTPPPTPP 89
Score = 43.2 bits (97), Expect = 3e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 262 KQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGD-STCIERGLFCNGEKDCG 438
K C + KNC PL +P C+ C + S C++R C+G +DC
Sbjct: 66 KSDCSGGEDEKNCVKPQTPPPTPPL----KPKCRISQRRCDNGSGCVDRMKICDGMRDCA 121
Query: 439 DGSDENSC 462
DGSDE C
Sbjct: 122 DGSDERGC 129
Score = 35.5 bits (78), Expect = 0.055
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C C + CI R C+ E DC D SDE C
Sbjct: 4 CSATEFRCNNGRCITRAFRCDDEDDCLDNSDEQGC 38
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVLPDC 528
C + C+ + C+G DCGD SDE++C P PP DF C C
Sbjct: 308 CRNGRCVLKEWLCDGMDDCGDSSDEDNCP-TRPPYTCPPSDF-TCANSQC 355
Score = 42.7 bits (96), Expect = 4e-04
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C C +S C+ C+GE DCGD SDE+ C
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDCGDRSDESGC 377
Score = 42.7 bits (96), Expect = 4e-04
Identities = 25/77 (32%), Positives = 34/77 (44%)
Frame = +1
Query: 232 LPGRFVLRIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGL 411
+PGRF D D +NC+ + E +C DG + C+ R
Sbjct: 436 IPGRFRCDHRSDCLDGSDE-QNCQNVTRPTPPPVKCRKNERMCADG------NGCVHRRW 488
Query: 412 FCNGEKDCGDGSDENSC 462
C+GE+DC DGSDE C
Sbjct: 489 ICDGERDCLDGSDEAGC 505
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 343 TEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNR 486
T C C + CI+ C+G DC D SDE +C + P R
Sbjct: 125 TARMTCDPSQHTCNNGQCIKASWLCDGASDCQDNSDEMNCPLTLAPGR 172
Score = 37.1 bits (82), Expect = 0.018
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 480
C C + CI C+G +CGDGSDE C + P
Sbjct: 510 CSSDEFTCTNQKCIPLPQKCDGTDNCGDGSDEKMCPTPSVP 550
Score = 33.9 bits (74), Expect = 0.17
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = +1
Query: 283 DAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
D +C ++ E KP C C D CI C+ E DC D SDE C
Sbjct: 363 DGENDCGDRSDESGCKPTT-----TCSANEFRCDDGRCITSTFRCDREFDCTDRSDERGC 417
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 355 LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDN 474
+C CG ST CI C+ C G DE +C N
Sbjct: 571 VCPRDHFRCGSSTICIANSKVCDATPHCPHGEDERNCATRN 611
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 370 FLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAP 492
F CI C+ DC DGSDE +C P P
Sbjct: 427 FTCAFSGRCIPGRFRCDHRSDCLDGSDEQNCQNVTRPTPPP 467
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 42.3 bits (95), Expect = 5e-04
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C G C + CI R C+ + DCGDGSDE C
Sbjct: 160 CGAGRYRCDNDRCIPRNWVCDRDNDCGDGSDETGC 194
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 465
C C + C+ R C+ + DCGDGSDE C+
Sbjct: 118 CSSSQFRCRNGRCVSRSWVCDKDNDCGDGSDEVQCN 153
Score = 35.1 bits (77), Expect = 0.073
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSDENSC 462
C + I R C+GE DC DGSDE C
Sbjct: 88 CSNGHLIYRHWRCDGENDCRDGSDETGC 115
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 42.3 bits (95), Expect = 5e-04
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVLPDCFCF 537
C + + CG+ C+ + C+ + DCGDG+DE +C P+ P +F C C
Sbjct: 667 CSENEITCGNGICVVKRWVCDQDDDCGDGTDELNC----APHTCRPNEF-TCADKRCILS 721
Query: 538 RGR 546
R R
Sbjct: 722 RWR 724
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 343 TEEP-LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDE-NSCDIDNDPNRAPPC 498
T+ P +C+DG CG S CI C+G DC + +DE ++C I+ + PC
Sbjct: 783 TKPPSICKDGEFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNGPC 837
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLE--CVLPDC 528
C+ C D CI C+G++DC D SDE +C PN + C E C +C
Sbjct: 706 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 759
Score = 37.5 bits (83), Expect = 0.014
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C+ C CI + C+GE DC + SDEN+C
Sbjct: 747 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDENNC 781
Score = 36.3 bits (80), Expect = 0.031
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 343 TEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
++E + F CI C+GE DCGD SDE +C
Sbjct: 582 SQEAFLNNEFTCVNTQKCIAATWKCDGEDDCGDNSDEINC 621
Score = 34.7 bits (76), Expect = 0.096
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSDE-NSC 462
C + CI R C+ + DC DGSDE NSC
Sbjct: 634 CTNGRCIPRRWVCDKDDDCHDGSDERNSC 662
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 352 PLCQDGFLACG-DSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPP 495
P C +G CG C+ + L CNG+ DC D SDE C I + P
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQDCGIPTVTTTSAP 772
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +1
Query: 355 LCQDGFLACG-----DSTCIERGLFCNGEKDCG-DGSDENSC 462
LC G+ CG + +CI + L CNG DC G DE+ C
Sbjct: 1529 LCPSGYFYCGTGPKGEISCITKALRCNGIYDCSVTGWDEDGC 1570
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 358 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPC-DFLECVLPDCF 531
C+ AC + CI+R C+GE DCGD SDE C +++ N C + C+
Sbjct: 114 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 173
Query: 532 C 534
C
Sbjct: 174 C 174
Score = 32.7 bits (71), Expect = 0.39
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 388 STCIERGLFCNGEKDCGDGSDENSC 462
S CI C+ + DCGD SDE +C
Sbjct: 85 SRCIPLRFVCDADDDCGDRSDERNC 109
Score = 31.5 bits (68), Expect = 0.89
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 364 DGFLACGDSTCIERGLFCNGEKDCGDGSDEN-SCDID 471
D + S CI + C+G DC D SDE C +D
Sbjct: 157 DRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGCGLD 193
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 41.5 bits (93), Expect = 8e-04
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 364 DGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 480
D L C + C ++ +C+G+ DC DGSDE +C +P
Sbjct: 226 DKQLRCDNGRCEDKRWWCDGQDDCNDGSDEKNCSASANP 264
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = +1
Query: 346 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDF 504
E C C CI L C+ KDC DGSDE +C + DP R C+F
Sbjct: 700 ENVSCTPESYKCRSGECISLDLLCDFNKDCLDGSDEENCGV-QDPGR---CNF 748
Score = 32.7 bits (71), Expect = 0.39
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 394 CIERGLFCNGEKDCGDGSDENSC 462
CI G C+ DCGDG DE C
Sbjct: 497 CISHGQLCDFVDDCGDGWDETGC 519
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +1
Query: 334 LLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
LL+ C G C S CI L C+G +DC D SDE +C
Sbjct: 15 LLFRVVGCCDPGQFECTSSECIPDVLKCDGSEDCADSSDEINC 57
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 343 TEEPLCQ-DGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
T+ +C+ D F + CI C+G DC G+DE C
Sbjct: 58 TKRSMCRVDQFECLIEGDCIPLSKHCDGTWDCQHGTDEMDC 98
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C C + CI R C+ + DCGDGSDE +C
Sbjct: 134 CGSTQFRCRNGNCINRNYVCDKDNDCGDGSDEVAC 168
Score = 35.9 bits (79), Expect = 0.042
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSDENSC 462
C + C+ R C+G DC DG+DE C
Sbjct: 104 CNNGHCVHRNWKCDGSNDCRDGTDEVGC 131
Score = 32.3 bits (70), Expect = 0.51
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C G C + CI C+ DC D SDE+ C
Sbjct: 176 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 210
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 39.9 bits (89), Expect = 0.003
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C+ G C + CI L C+ + DCGD SDE C
Sbjct: 5 CKAGDFRCANGRCISGALVCDLDDDCGDESDERGC 39
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 39.9 bits (89), Expect = 0.003
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C C +S C++R CN + DCGD SDE C
Sbjct: 145 CLASQYVCANSKCVDRDQLCNFKDDCGDNSDELPC 179
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 39.9 bits (89), Expect = 0.003
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSDENSC 462
C + CI R C+ + DCGDGSDE +C
Sbjct: 7 CRNGNCINRNYVCDKDNDCGDGSDEVAC 34
Score = 32.3 bits (70), Expect = 0.51
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C G C + CI C+ DC D SDE+ C
Sbjct: 42 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 76
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 39.9 bits (89), Expect = 0.003
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSDENSCD 465
C + C+ R C+G+ DC DGSDE +C+
Sbjct: 28 CENKLCVPRTWLCDGDNDCHDGSDEKNCE 56
Score = 36.3 bits (80), Expect = 0.031
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSDEN 456
CG+STCI + C+G DC D SDE+
Sbjct: 72 CGNSTCIPLTVLCDGLYDCADRSDES 97
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +1
Query: 370 FLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVLPDCFCFRGRQ 549
F D CI + C+GE DC D SDE C ++ C+ +CV P + G +
Sbjct: 95 FKCVSDGKCIPKSWRCDGEMDCPDSSDEEGCVNRTCSSKEFNCN-NQCV-PLSWKCDGEK 152
Query: 550 Q*FPGDFTRQKCS 588
PG F + C+
Sbjct: 153 DCRPGGFDEEGCA 165
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLE--CVLPDC 528
C+ C D CI C+G++DC D SDE +C PN + C E C +C
Sbjct: 551 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 604
Score = 31.5 bits (68), Expect = 0.89
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 459
C+ C CI + C+GE DC + SDE +
Sbjct: 592 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDETT 625
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 38.3 bits (85), Expect = 0.008
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 465
C+ F C CI C+ DCGD SDE CD
Sbjct: 1383 CEPNFFRCNTGKCISARWQCDQLDDCGDNSDEIGCD 1418
Score = 35.5 bits (78), Expect = 0.055
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 352 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
P C++ C + CI+ C+ K+C DGSDE C
Sbjct: 1344 PPCKENQFRCDNGQCIDGDPRCDKYKNCTDGSDELGC 1380
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 346 EEPLCQDGFLACGD--STCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVL 519
E C+ +++C + CI + C+G DC D SDE C + N+ CD +C+
Sbjct: 1303 EPSTCKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEEDCPPCKE-NQF-RCDNGQCID 1360
Query: 520 PDCFC 534
D C
Sbjct: 1361 GDPRC 1365
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 37.5 bits (83), Expect = 0.014
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 358 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDN 474
C +G AC + C+ + C+ DC DGSDE +C I +
Sbjct: 88 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPISS 127
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 37.1 bits (82), Expect = 0.018
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 337 LYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
L + E C C + CI+ CN +DC DGSDE SC
Sbjct: 385 LVSSEGPCGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDEISC 426
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 37.1 bits (82), Expect = 0.018
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 465
C AC CI+ C+G DC D SDE+ CD
Sbjct: 1155 CLSSKFACESGECIDVVGLCDGTDDCKDASDESRCD 1190
Score = 35.1 bits (77), Expect = 0.073
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE 453
C C C++ L C+G+KDC DG+DE
Sbjct: 1193 CSKDEYQCVSGACVKWPLTCDGKKDCEDGTDE 1224
Score = 33.5 bits (73), Expect = 0.22
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSDENSC 462
C + C+ R L C+G+ C D SDE +C
Sbjct: 1126 CVNGQCVSRDLICDGDNACLDFSDEANC 1153
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 37.1 bits (82), Expect = 0.018
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 358 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDI 468
C +G AC + C+ + C+ DC DGSDE +C I
Sbjct: 901 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 938
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 283 DAVKNCKLKNKERKIKPLLYTEEPLC-QDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 459
D V +C + E+ EE C D F + C+ C+ DC D DE++
Sbjct: 922 DTVHDCDDGSDEKNCPISRRDEEFGCGSDKFTCDNGAKCLPLTWLCDSITDCMDSKDEHN 981
Query: 460 C 462
C
Sbjct: 982 C 982
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 36.7 bits (81), Expect = 0.024
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +1
Query: 352 PLCQDGFLACGDS-TCIERGLFCNGEKDCGDGSDEN-SCDID--NDPNR--APPCDFLEC 513
P C G C + CI C+G +DC DG DE C+ID D N + C+ L
Sbjct: 209 PPCMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDEPLRCNIDECKDHNGHCSQKCNDLTL 268
Query: 514 VLPDCFCFRG 543
+C CF G
Sbjct: 269 GY-NCSCFSG 277
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 36.3 bits (80), Expect = 0.031
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 364 DGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPN 483
D C + CI C+ E DCGD SDE +C ++ N
Sbjct: 9 DTSFKCDNGRCISATWVCDTENDCGDNSDEMNCSKYDNKN 48
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 36.3 bits (80), Expect = 0.031
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 358 CQDGFLACG-DSTCIERGLFCNGEKDCGDGSDENSC 462
CQ C D CI C+GE DC DG DE C
Sbjct: 338 CQSNEFYCSKDDRCINIFWKCDGESDCTDGEDEQGC 373
Score = 36.3 bits (80), Expect = 0.031
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 394 CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPC 498
C+ R L C+G+ DC D SDE C + NR C
Sbjct: 1356 CLNRTLQCDGKPDCSDYSDEAHCRVRKSINRNVVC 1390
Score = 34.7 bits (76), Expect = 0.096
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 358 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSC 462
C D C S CI+ C+G DC D SDE+ C
Sbjct: 1303 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 1338
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 358 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDEN 456
C + C +S C+++ C+ DCGDG+DE+
Sbjct: 120 CTANEVRCKNSGHCVQQQQVCDFTDDCGDGTDED 153
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 35.5 bits (78), Expect = 0.055
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 346 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND 477
+ P + C CI C+G+ DCGD SDE SC ND
Sbjct: 355 DAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRSDE-SCSWIND 397
Score = 33.1 bits (72), Expect = 0.29
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 394 CIERGLFCNGEKDCGDGSDENSCDIDNDPNR 486
CI+ C+G+ +C D SDEN C +P+R
Sbjct: 285 CIDISYKCDGKPECADHSDENDCPPLINPDR 315
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 34.7 bits (76), Expect = 0.096
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 358 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSC 462
C D C S CI+ C+G DC D SDE+ C
Sbjct: 6 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 41
Score = 32.3 bits (70), Expect = 0.51
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 394 CIERGLFCNGEKDCGDGSDENSC 462
C+ R L C+G+ DC D SDE C
Sbjct: 59 CLNRTLQCDGKPDCSDYSDEAHC 81
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 34.3 bits (75), Expect = 0.13
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +1
Query: 355 LCQDGFLACG-----DSTCIERGLFCNGEKDCG-DGSDENSC 462
LC G+ CG + +CI + L CNG DC G DE+ C
Sbjct: 6 LCPSGYFYCGTGPKGEISCINKALRCNGIYDCSVTGWDEDGC 47
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.9 bits (69), Expect = 0.68
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C L C C+ C+G KDC G DE C
Sbjct: 311 CFTNELTCSSGRCVPSINLCDGVKDCEQGLDELRC 345
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C C CI C+ + +C D SDE+ C
Sbjct: 275 CASYEFQCTSGHCISGSSRCDSDYNCMDSSDEDGC 309
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 31.5 bits (68), Expect = 0.89
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE 453
C + C C+ C+G DC D SDE
Sbjct: 216 CSEEEFPCASGDCVPLTSVCDGSADCSDSSDE 247
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 31.5 bits (68), Expect = 0.89
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSDENSC 462
C + I+ C+G DCGD SDE++C
Sbjct: 424 CDNDNYIQCQWKCDGTDDCGDHSDEDNC 451
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 31.5 bits (68), Expect = 0.89
Identities = 18/64 (28%), Positives = 24/64 (37%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVLPDCFCF 537
C L C C++ C+G +DC G DE C D N C C+ C
Sbjct: 245 CFTNELTCSSGRCVQSINLCDGVRDCEYGLDELRCG-DGCKNSEFLCPDSTCIPWSSTCN 303
Query: 538 RGRQ 549
+ Q
Sbjct: 304 QSTQ 307
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = +1
Query: 286 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
A+ + + ++ PL C C CI C+G+ +C D SDE+ C
Sbjct: 185 AIDDIMITTEKCATSPLYAAPGYKCAPYEFQCTSGHCISGSSRCDGDYNCMDRSDEDGC 243
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 31.5 bits (68), Expect = 0.89
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C L C C+ C+G KDC G DE C
Sbjct: 1140 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRC 1174
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C C CI C+ + +C D SDE+ C
Sbjct: 1104 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 1138
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 31.5 bits (68), Expect = 0.89
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C L C C+ C+G KDC G DE C
Sbjct: 230 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRC 264
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C C CI C+ + +C D SDE+ C
Sbjct: 194 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 228
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKD----CGDGSDENSCDIDNDPNRAPPCDFLECVL 519
C+ C + CI + C G CDI DP + PC +CVL
Sbjct: 991 CEHAMNTCYSNPCIHGNCLVRDDSSFECICHKGFTGTKCDIRVDPCASSPCAHGQCVL 1048
>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
Length = 413
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 391 TCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVL-PDC 528
T I R +C+ + C GS N +N +P CD C + DC
Sbjct: 18 TKIVRAEYCSSDFSCNYGSGRNRICCNNHCTYSPTCDGYSCSMDSDC 64
>SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 933
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/68 (25%), Positives = 26/68 (38%)
Frame = +1
Query: 229 TLPGRFVLRIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 408
T P + R EKQ C W+D K+ IKP + + C + + T +
Sbjct: 524 TTPSQTAQRFEKQQCIWRDTNNLIKINRVPGNIKP--HKQMVFCHINARSVRNKTTVIND 581
Query: 409 LFCNGEKD 432
C+ D
Sbjct: 582 YICDHSVD 589
>SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)
Length = 979
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/68 (25%), Positives = 26/68 (38%)
Frame = +1
Query: 229 TLPGRFVLRIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 408
T P + R EKQ C W+D K+ IKP + + C + + T +
Sbjct: 125 TTPSQTAQRFEKQQCIWRDTNNLIKINRVPGNIKP--HKQMVFCHINARSVRNKTTVIND 182
Query: 409 LFCNGEKD 432
C+ D
Sbjct: 183 YICDHSVD 190
>SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)
Length = 469
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +1
Query: 379 CGDSTCIERGLFCNGEKDCGDGSD---ENSCDIDNDPNRAPPCD 501
C D + G C+G C G D ++SCD+ D + CD
Sbjct: 412 CDDDDSCDVGKDCDGYDSCDVGEDCEGDDSCDVGEDCDGNDSCD 455
>SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23)
Length = 198
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 340 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCGDGSDENSCDIDNDPNRAPPC 498
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C
Sbjct: 2 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNNVQGPEC 58
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 340 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCGDGSDENSCDIDNDPNRAPPC 498
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C
Sbjct: 70 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNYVQGPEC 126
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 340 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCGDGSDENSCDIDNDPNRAPPC 498
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C
Sbjct: 992 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNNVQGPEC 1048
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C L C C+ C+G KDC DE C
Sbjct: 267 CFTNELTCSSGRCVPSINLCDGVKDCEQDLDELRC 301
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 358 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 462
C C CI C+ + +C D SDE+ C
Sbjct: 231 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 265
>SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)
Length = 628
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +1
Query: 247 VLRIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPL--CQDG-FLACGDSTCIERGLFC 417
+ R+E+ + +A + +L+ +++++K +E C D + D I++ +
Sbjct: 327 ISRLEQVVEEISEAERAKELRREQKRLKKKAKRKEKFKCCPDAEIIEIKDKDPIQKHMCS 386
Query: 418 NGEKDCGDGSDENSCDIDNDPNRA-PPC 498
NG + +G E SC+ ++D + PC
Sbjct: 387 NGSTEDIEGGHEGSCEEEDDGDSIDTPC 414
>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1574
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = -2
Query: 367 HLDRVVLQCTREALFYAPCS*AYNFSQH-LSNRRSVSQYEEQTGRATYSLYSRGSTLDDV 191
H+ R ++ CTR + CS + H S+RR SQ E Q L S ++
Sbjct: 937 HMGRSLIACTRRWMRKVACSPSKETRPHRQSSRRLASQQESQQSLLNAPLPSSSKSISPT 996
Query: 190 ATVVALAGHQPEPFAG 143
+ G QP+ AG
Sbjct: 997 LSGSGPLG-QPDGSAG 1011
>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 418 NGEKDC-GDGSDENSCDIDNDPNRAPPC 498
NG KDC GD +E C+ D P + PC
Sbjct: 472 NGGKDCVGDAKEEKDCNTDKCPPK--PC 497
>SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 612
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 418 NGEKDC-GDGSDENSCDIDNDPNRAPPC 498
NG KDC GD +E C+ D P + PC
Sbjct: 134 NGGKDCVGDAKEEKDCNTDKCPPK--PC 159
>SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 446
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 418 NGEKDC-GDGSDENSCDIDNDPNRAPPC 498
NG KDC GD +E C+ D P + PC
Sbjct: 387 NGGKDCVGDAKEEKDCNTDKCPPK--PC 412
>SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 666
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 418 NGEKDC-GDGSDENSCDIDNDPNRAPPC 498
NG KDC GD +E C+ D P + PC
Sbjct: 119 NGGKDCVGDAKEEKDCNTDKCPPK--PC 144
>SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 684
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 418 NGEKDC-GDGSDENSCDIDNDPNRAPPC 498
NG KDC GD +E C+ D P + PC
Sbjct: 503 NGGKDCVGDAKEEKDCNTDKCPPK--PC 528
>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2229
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 400 ERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDFLECVL--PDCFCFRGRQ 549
ER N E++ + S +N R+ DFLEC + P+C C + Q
Sbjct: 1297 ERNASSNIEENVEEASSAEGVVQENSTRRSRILDFLECPVHEPNCPCLKEHQ 1348
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,092,417
Number of Sequences: 59808
Number of extensions: 680164
Number of successful extensions: 2509
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 2087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2502
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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