Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30692
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70330.1 68414.m08091 equilibrative nucleoside transporter fa...    29   3.9  
At5g21170.1 68418.m02530 5'-AMP-activated protein kinase beta-2 ...    29   5.2  
At5g50070.1 68418.m06200 invertase/pectin methylesterase inhibit...    28   6.8  
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k...    28   6.8  
At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N domain-...    28   9.0  

>At1g70330.1 68414.m08091 equilibrative nucleoside transporter
           family protein contains similarity to SWISS-PROT:Q14542
           equilibrative nucleoside transporter 2 (Equilibrative
           nitrobenzylmercaptopurine riboside-insensitive
           nucleoside transporter, Equilibrative NBMPR-insensitive
           nucleoside transporter, Nucleoside transporter, ei-type,
           36 kDa nucleolar protein HNP36, Hydrophobic nucleolar
           protein, 36 kDa, Delayed-early response protein 12)
           [Homo sapiens]
          Length = 450

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -3

Query: 519 KDTLEEIAWRSSIWVVVNITRIFIRSIATVLFAVTEKTAFNASRVAASEEAILTEWF 349
           K +L  +AWR+++W +V  T++       VL  +   + F           +LT+W+
Sbjct: 278 KGSLTGLAWRTTLWDIV--TKVKSHGFGIVLLYMVTLSIFPGYITEDVHSELLTDWY 332


>At5g21170.1 68418.m02530 5'-AMP-activated protein kinase beta-2
           subunit, putative similar to Swiss-Prot:Q9QZH4
           5'-AMP-activated protein kinase, beta-2 subunit (AMPK
           beta-2 chain) [Rattus norvegicus]
          Length = 283

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 732 LSPPPKLHLTILGRSKE-KFTPKGSPKIPVHFFFSPKW 842
           L+ PP+LHLT+LG ++E     K    +  H F    W
Sbjct: 217 LAVPPQLHLTLLGTTEETAIATKPQHVVLNHVFIEQGW 254


>At5g50070.1 68418.m06200 invertase/pectin methylesterase inhibitor
           family protein low similarity to pollen-specific protein
           Bnm1 [Brassica napus] GI:1857671; contains Pfam profile
           PF04043: Plant invertase/pectin methylesterase inhibitor
          Length = 183

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 286 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDS 390
           A K+    N   K +P L T+   CQ+ F++ GDS
Sbjct: 82  AKKSASFANGAAKKEPSLKTQFQTCQEAFVSIGDS 116


>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
           putative 
          Length = 333

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 466 YHKNFHQIHRHSPFRRYRKDRVQC 395
           YH +    H HS  RR  KDR +C
Sbjct: 245 YHSHRSSAHTHSSHRRRSKDREEC 268


>At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 619

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 123 NYARTRTPANGSGWWPARATTVATSSSVLP 212
           N + T   A GSGW PA  +  A S+  LP
Sbjct: 421 NASFTGAAAAGSGWHPANRSEAAQSNGYLP 450


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,254,557
Number of Sequences: 28952
Number of extensions: 484054
Number of successful extensions: 1303
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)