Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30691
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   2.3  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   4.1  
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    24   7.1  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    24   7.1  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    24   9.4  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    24   9.4  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 202 DHRDHRPRRQR--TGDPRNPNLGAPGSELSERNKR 300
           D+RD  PRR+R   G  R    G  GSE   R +R
Sbjct: 20  DYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRR 54


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 245 LATRTWAPPAPSSVRGTSAP 304
           ++T T APP+PS +R   AP
Sbjct: 81  ISTTTLAPPSPSPLRLNEAP 100


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 115 HSVVRTRGGARGPCPGTE 168
           H+VV  RGG    CPG +
Sbjct: 98  HAVVLLRGGRAQDCPGVQ 115


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 303 HRHPAATIPLPHAELHSGRE 362
           H HP A  P P A   SG E
Sbjct: 301 HNHPTAVSPFPGAATGSGGE 320


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 139 PRECEQRYEVE*PS 98
           P+ECE R+EV+ P+
Sbjct: 7   PKECEWRFEVDEPA 20


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 214  HRPRRQRTGDPRNPNLGAPGS 276
            H    +   DP+NP  G+ GS
Sbjct: 1277 HETHEKSENDPKNPKAGSQGS 1297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,324
Number of Sequences: 5004
Number of extensions: 23102
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)