Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30691
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0430 - 3406472-3406490,3406662-3406681,3407330-3407428,340... 32 0.18
08_02_0232 - 14584952-14586451 30 0.55
10_01_0129 + 1535823-1537196 28 2.2
04_04_0058 - 22416949-22418196 28 2.2
11_03_0097 + 9967351-9967969,9968180-9968259 28 2.9
05_02_0072 - 6334613-6335215 27 3.8
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 27 3.8
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348... 27 5.1
05_01_0212 + 1601861-1603600 27 5.1
03_06_0524 - 34502286-34502609,34502998-34503084,34503280-345033... 27 5.1
12_01_0347 + 2658545-2659309 27 6.7
04_03_0314 - 14238620-14240128 27 6.7
03_05_0366 - 23505755-23506441 27 6.7
03_02_0311 - 7320832-7321554 27 6.7
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 27 6.7
12_02_1106 - 26134960-26135115,26135901-26136207,26136421-26137004 26 8.9
11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584 26 8.9
09_04_0354 + 16919133-16919235,16920145-16920355,16920478-169205... 26 8.9
08_01_0995 - 10079140-10079314,10080069-10080086,10081362-10081600 26 8.9
06_02_0155 + 12380452-12381012 26 8.9
04_03_0581 - 17496260-17496724 26 8.9
02_02_0414 + 9972157-9972257,9972925-9973003,9973657-9973755,997... 26 8.9
>05_01_0430 -
3406472-3406490,3406662-3406681,3407330-3407428,
3407810-3407880,3407956-3408127
Length = 126
Score = 31.9 bits (69), Expect = 0.18
Identities = 23/50 (46%), Positives = 25/50 (50%)
Frame = -2
Query: 278 SEPGAPRFGLRGSPVRWRRGR*SL*SPACRPQGQAGGSVPGQGPRAPPRV 129
+EP P FG GSP R RR R S A R G GG P + P AP V
Sbjct: 9 AEPRPPGFGSSGSPCR-RRHRRRWCSWAARRMG--GGRRPQESPAAPVAV 55
>08_02_0232 - 14584952-14586451
Length = 499
Score = 30.3 bits (65), Expect = 0.55
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 133 RGGARGPCPGTEPPA*PCGRQAGDHRDHRPR 225
R GARG PG+ PP P ++A H D R R
Sbjct: 26 RVGARGRRPGSAPPPPPRPQEAHRHGDSRQR 56
>10_01_0129 + 1535823-1537196
Length = 457
Score = 28.3 bits (60), Expect = 2.2
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +1
Query: 130 TRGGARGPCP-GTEPPA*PCGRQA----GDHRDHRPRRQRTGDPRNPNLGAPGSELSE 288
+R +R P P G+ P + P ++ GD + PRR+R G+P +P+ PG+ SE
Sbjct: 35 SRRSSRRPRPSGSSPTSSPGQIRSPPDDGDGQPPPPRRRRRGEPPSPS-PVPGTATSE 91
>04_04_0058 - 22416949-22418196
Length = 415
Score = 28.3 bits (60), Expect = 2.2
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +1
Query: 112 PHSVVRTRGGARGPCPGTEPPA*PCGRQAGDHRDHRPRRQRTGDPRNPNLGAPGSELSER 291
P SV+ T + P P PPA P + H RR + G +P G G + E
Sbjct: 30 PPSVILTPFASPSPAPWACPPAFPAPSPSPLHGAAGGRRDQGGYHGSPPGG--GGDADEH 87
Query: 292 NKRTIGIL 315
+R I ++
Sbjct: 88 RRRIINLI 95
>11_03_0097 + 9967351-9967969,9968180-9968259
Length = 232
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 157 PGTEPPA*PCGRQAGDHRDHRPRRQRTGDPRN 252
PGT P A P + H++ RPR R +N
Sbjct: 35 PGTPPAAAPAPARRRRHKNRRPRAHRRAAAKN 66
>05_02_0072 - 6334613-6335215
Length = 200
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 254 RTWAPPAPSSVRGTSAPSAS 313
R APPAPS+ TSAP+ S
Sbjct: 134 RRKAPPAPSAASSTSAPTRS 153
>02_05_0197 - 26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 303 HRHPAATIPLPHAE 344
HRH A +P+PHAE
Sbjct: 1005 HRHRAVAVPVPHAE 1018
>05_03_0662 +
16732965-16733037,16733310-16733413,16734468-16734861,
16736291-16736901,16739238-16739289,16739771-16739826,
16739962-16740190,16740980-16741212,16741480-16741740
Length = 670
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +2
Query: 239 ETLATRTWAPP--APSSVRGTSAPSASC 316
+TL+T + APP +PS+ S PSA+C
Sbjct: 312 DTLSTHSAAPPPDSPSTAAPPSLPSAAC 339
>05_01_0212 + 1601861-1603600
Length = 579
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -1
Query: 312 DADGALVPLTELGAGGAQVRVARVSCALAAGAMISMI 202
+ DGA PL AGGA VA LAAGA + +
Sbjct: 82 ETDGA-TPLHMAAAGGAANAVAATRLLLAAGASVDAL 117
>03_06_0524 -
34502286-34502609,34502998-34503084,34503280-34503360,
34503962-34504114,34504898-34504954,34505050-34505296,
34505412-34505527,34506074-34506225,34506713-34506902,
34506976-34507169,34507256-34507388
Length = 577
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -2
Query: 305 MVRLFLSLSSEPGAPRFGLRGSPVRWRRG 219
M L LSL P P GL G R RRG
Sbjct: 1 MASLVLSLRIAPSTPPLGLGGGRFRGRRG 29
>12_01_0347 + 2658545-2659309
Length = 254
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -2
Query: 275 EPGAPRFGLRGSPV--RWRRGR*SL*SPACRPQGQAGGSVPGQG 150
EPG+P+ G + R R R S RP+G GG PG G
Sbjct: 123 EPGSPKVSCIGKVLSDRERARRHRRWSLETRPRGVGGGCCPGLG 166
>04_03_0314 - 14238620-14240128
Length = 502
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 257 TWAPPAPSSVRGTSAPSAS 313
T APP P++VR T AP+A+
Sbjct: 33 TAAPPTPTAVRCTPAPAAA 51
>03_05_0366 - 23505755-23506441
Length = 228
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 163 TEPPA*PCGRQAGDHRDHRPRRQ-RTGDPRNP 255
+ PP PCG G H HR +RQ +G R+P
Sbjct: 73 SRPP--PCGSSGGRHGGHRRQRQGGSGWERHP 102
>03_02_0311 - 7320832-7321554
Length = 240
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 300 HHRHPAATIPLPHAELHSGR 359
HH HP P AEL S R
Sbjct: 147 HHHHPGVAAPAGRAELRSAR 166
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 315 QDADGALVPLTELGAGGAQVRVARVSCALAA 223
Q+ G+LV ++ G GGAQ R SC+ +A
Sbjct: 178 QNTAGSLVEDSDYGPGGAQQSQKRESCSKSA 208
>12_02_1106 - 26134960-26135115,26135901-26136207,26136421-26137004
Length = 348
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 288 LTELGAGGAQVRVARVSCALAAGA 217
LT G GG + VAR+ CA ++ +
Sbjct: 43 LTRRGGGGGNISVARLRCAASSSS 66
>11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584
Length = 144
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 199 GDHRDHRPRRQRTGDPRNPNLGAPGSELSERNKR 300
GD R R RQ D R + GAP ++ + R+ R
Sbjct: 56 GDPRRRRAARQHGEDRRPVHAGAPEADAARRSPR 89
>09_04_0354 +
16919133-16919235,16920145-16920355,16920478-16920544,
16920767-16920808
Length = 140
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 97 EKVTLPHSVVRTRGGARGPCP-GTEP 171
+K + H V+R RGG+RG P G EP
Sbjct: 62 QKESTLHLVLRLRGGSRGGYPKGIEP 87
>08_01_0995 - 10079140-10079314,10080069-10080086,10081362-10081600
Length = 143
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 85 ENHDEKVTLPHSVVRTRGGARGPCPGTEPP 174
+N D+K TLP R G AR P PP
Sbjct: 48 DNDDDKATLPPPQHRGGGAARPPRADPVPP 77
>06_02_0155 + 12380452-12381012
Length = 186
Score = 26.2 bits (55), Expect = 8.9
Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Frame = +1
Query: 112 PHS--VVRTRGGARGPCPGTEPPA*PCGRQAGDHRDHRPRRQRTGDPRN--PNLGAPGSE 279
PH+ V GGA P P T P GD + P+ G P P P +
Sbjct: 42 PHAGGAVNGNGGAAPPAPATSPDTEVRAPTYGDKQISPPKEGAAGKPPMVVPAANHPQAP 101
Query: 280 LSERNKRTIG 309
E K+ G
Sbjct: 102 TGEEAKKAHG 111
>04_03_0581 - 17496260-17496724
Length = 154
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -2
Query: 329 GNSCRRMPMVRLFLSLSSEPGAPRFGLRGSPVRWR 225
GN CRR L + GAPR G +WR
Sbjct: 22 GNGCRRRHRAARLLGEERDGGAPRQGWPWIHPKWR 56
>02_02_0414 +
9972157-9972257,9972925-9973003,9973657-9973755,
9973848-9973913,9974225-9974376,9974503-9974584,
9974696-9974781,9974919-9975098,9975320-9975717,
9976192-9976790,9977141-9977239
Length = 646
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 275 EPGAPRFGLRGSPVRWRRGR*SL*SPACRPQGQAGGSVPGQGPR 144
+PG P SP + G+ S SP GQ GG+ P Q P+
Sbjct: 447 QPGQPVGMHPQSPHSGQFGQGSFMSPQQMANGQLGGTQPRQSPQ 490
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,880,001
Number of Sequences: 37544
Number of extensions: 253450
Number of successful extensions: 1013
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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