Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30691
         (384 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_41641| Best HMM Match : PT (HMM E-Value=3.1)                        28   2.3  
SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013)                     27   4.0  
SB_46907| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_39437| Best HMM Match : TLP-20 (HMM E-Value=1.5)                    26   9.2  
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 200  PACRPQGQAGGSVPGQGPRAP 138
            P  RPQ   GG+VP + P+AP
Sbjct: 1072 PTKRPQSPVGGAVPTKRPQAP 1092



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 200  PACRPQGQAGGSVPGQGPRAP 138
            P  RPQ   GG+VP + P+AP
Sbjct: 1098 PTKRPQAPVGGAVPTKRPQAP 1118


>SB_41641| Best HMM Match : PT (HMM E-Value=3.1)
          Length = 873

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 200 PACRPQGQAGGSVPGQGPRAP 138
           P  RPQ   GG+VP + P+AP
Sbjct: 596 PTKRPQSPVGGAVPTKRPQAP 616



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 200 PACRPQGQAGGSVPGQGPRAP 138
           P  RPQ   GG+VP + P+AP
Sbjct: 622 PTKRPQAPVGGAVPTKRPQAP 642


>SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 660

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 160 GTEPPA*PCGRQAGDHRDHRPRRQRTGDPRNPNLGA-PGSELSERNK 297
           G  PPA P    A   +D   RRQR   P N NLG  P S+ + R++
Sbjct: 447 GVTPPARPPLAAAQQTKDLPFRRQRFALPDNANLGCYPWSKQTFRHE 493


>SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013)
          Length = 406

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +1

Query: 151 PCPGTEPPA*PCGRQAGDHRDHRPRRQRTGDPRNPNLGAPGSELSERNKRTI 306
           P  GT        R      D RP+RQ++GD +  +   P   LS   KR I
Sbjct: 278 PDRGTTSSPDQQARDGSQEADSRPQRQKSGD-QTDSSNKPQRTLSASEKRAI 328


>SB_46907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 308 PMVRLFLSLSS--EPGAPRFGLRGSPVRWRR 222
           P V+ F +LS   EP  P +  RGS +RW++
Sbjct: 47  PGVKSFTTLSQAVEPPRPEYERRGSLMRWKK 77


>SB_39437| Best HMM Match : TLP-20 (HMM E-Value=1.5)
          Length = 424

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/40 (27%), Positives = 14/40 (35%)
 Frame = +1

Query: 82  PENHDEKVTLPHSVVRTRGGARGPCPGTEPPA*PCGRQAG 201
           P  H   +  PHS +       G C     P+ P  R  G
Sbjct: 41  PTPHGRSIPEPHSSINATRSINGGCTAPNTPSDPSSRTQG 80


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +1

Query: 139 GARGP--CPGTEPPA*PCGRQAGDHRDHRPRRQRTGDPRNP 255
           G +GP   PG + PA P GRQ        P    T  PR P
Sbjct: 511 GIQGPQGLPGKQGPAGPQGRQGASGPPGIPGLNGTVGPRGP 551


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,070,039
Number of Sequences: 59808
Number of extensions: 228155
Number of successful extensions: 704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)