Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30691
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    32   0.16 
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    32   0.16 
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    30   0.49 
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical...    29   1.5  
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF025460-4|AAB70987.1|  156|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical p...    26   7.9  
U23518-2|AAC70884.4|  496|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transpor...    26   7.9  

>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
            protein protein.
          Length = 1439

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 230  SAQETLATRTWAPPAPSSVRGTSAPSASCGNY 325
            +A   +  R W  P PS+    S  SA CGNY
Sbjct: 1069 TAPAAVNPRGWTQPTPSNTSAASVESAFCGNY 1100


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical protein
            C04D8.1 protein.
          Length = 1317

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 230  SAQETLATRTWAPPAPSSVRGTSAPSASCGNY 325
            +A   +  R W  P PS+    S  SA CGNY
Sbjct: 947  TAPAAVNPRGWTQPTPSNTSAASVESAFCGNY 978


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 199 GDHRDHRPRRQRTGDPRNPNLGAPGSELSERNKR 300
           G+HR+HR  ++   D R+ +  +  SE SER+ R
Sbjct: 301 GEHREHREHKEHRRDDRHRSERSERSERSERSDR 334


>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
            protein Y75B8A.13 protein.
          Length = 1420

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 196  AGDHRDHRPRRQRTGDPRNPNLGAPGSELSERNKRTIGILRQLFP 330
            +G H D    R+R  DP+     +P S+ S+ +    G  RQ  P
Sbjct: 867  SGSHEDPTAARERLDDPQGLRESSPSSDESDSSSEAPGSPRQQDP 911


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 190 RQAGDHRDHRPRRQRTG--DPRNPNLGAPGSELSERNKRTI 306
           ++ G H DH  R +R G  DP +PN+   G   + R KR+I
Sbjct: 109 KKHGTHVDHHGRVRRNGDHDPNDPNVDHTGH--NHRVKRSI 147


>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 181  PCGRQAGDHRDHRPRRQRTGDPRNPNLGAPGSE 279
            P  R     R   PRRQ+ G  R PN    GS+
Sbjct: 1156 PSPRAVNSSRSTSPRRQQPGSMRRPNNHHSGSQ 1188


>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 181  PCGRQAGDHRDHRPRRQRTGDPRNPNLGAPGSE 279
            P  R     R   PRRQ+ G  R PN    GS+
Sbjct: 1156 PSPRAVNSSRSTSPRRQQPGSMRRPNNHHSGSQ 1188


>Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical
           protein T01B4.2c protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -2

Query: 242 SPVRWR--RGR*SL*SPACRPQGQAGGSV--PGQGPRAPPRVRTT 120
           +PVRWR      S+ +   RP  +   SV  PG+ P+APP V  T
Sbjct: 496 NPVRWRAKNSAYSMENMPDRPISERRFSVLSPGEAPQAPPPVLGT 540


>Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical
           protein T01B4.2b protein.
          Length = 733

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -2

Query: 242 SPVRWR--RGR*SL*SPACRPQGQAGGSV--PGQGPRAPPRVRTT 120
           +PVRWR      S+ +   RP  +   SV  PG+ P+APP V  T
Sbjct: 517 NPVRWRAKNSAYSMENMPDRPISERRFSVLSPGEAPQAPPPVLGT 561


>Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical
           protein T01B4.2a protein.
          Length = 757

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -2

Query: 242 SPVRWR--RGR*SL*SPACRPQGQAGGSV--PGQGPRAPPRVRTT 120
           +PVRWR      S+ +   RP  +   SV  PG+ P+APP V  T
Sbjct: 541 NPVRWRAKNSAYSMENMPDRPISERRFSVLSPGEAPQAPPPVLGT 585


>Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical
           protein F02D10.1 protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 188 PQGQAG-GSVPGQGPRAPP 135
           P GQ+G GS  G GP+ PP
Sbjct: 249 PDGQSGSGSAGGPGPKGPP 267


>AF025460-4|AAB70987.1|  156|Caenorhabditis elegans Hypothetical
           protein F53A3.1 protein.
          Length = 156

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 29  LPPSTIRNEDWIESC-K*YPRIMMRRSLYLIALFALAGV 142
           LPP TI  + WI  C      +++   LYLI    L GV
Sbjct: 115 LPPVTIGQDAWIRRCVLAASSLLLAGLLYLITYLKLRGV 153


>Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical
           protein C01G10.3 protein.
          Length = 358

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 236 QETLATRTWAPPAPSS 283
           ++ L TRTW+PP P S
Sbjct: 343 RKVLPTRTWSPPTPIS 358


>U23518-2|AAC70884.4|  496|Caenorhabditis elegans Hypothetical
           protein F21D12.3 protein.
          Length = 496

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 247 RNPNLGAPGSELSERNKRTIGILRQLFPSLTQN 345
           RNP++G       E  KRT+G   Q F S+  N
Sbjct: 105 RNPHIGVCRKPFPEMAKRTMGTNMQRFTSVLGN 137


>AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transporter
           (pgp related)protein 9, isoform a protein.
          Length = 815

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 235 TGDPRNPNLGAPGSELSERNKRTIGILRQL 324
           T D  N N+G  GS++S   K+ I I R L
Sbjct: 647 TTDGYNTNVGEKGSQMSGGQKQRIAIARAL 676


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,510,000
Number of Sequences: 27780
Number of extensions: 161576
Number of successful extensions: 508
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)