Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30691
(384 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05940.1 68418.m00657 expressed protein contains Pfam profile... 27 3.3
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 27 3.3
At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containi... 27 5.7
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 27 5.7
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 27 5.7
At5g01280.1 68418.m00037 expressed protein 26 7.5
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 26 7.5
At5g21940.1 68418.m02547 expressed protein supported by full len... 26 9.9
At5g01550.1 68418.m00070 lectin protein kinase, putative similar... 26 9.9
>At5g05940.1 68418.m00657 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 611
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 280 LSERNKRTIGILRQLFPSLTQNSIAGEKL 366
L ER++ + L+Q FPSLTQ S+ K+
Sbjct: 403 LVERSETLLRCLKQRFPSLTQTSLDISKI 431
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 151 PCPGTEPPA*PCGRQAGDHRDHRPRR 228
PC GT + PCG +GD R R +R
Sbjct: 275 PCNGTGEISKPCGACSGDGRVRRTKR 300
>At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 819
Score = 26.6 bits (56), Expect = 5.7
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Frame = +1
Query: 82 PENHDEKVTLPHSVVRTRGGARGPCPGTEP-------PA*PCGRQAGDHRDHRPR-RQRT 237
P +HD+ + + T + P P EP P RQ + R R R R
Sbjct: 19 PYSHDQNHHISRTPFLTTSLSSPPPPPVEPLLHDVFLHQNPNSRQPISSQTSRNRNRTRI 78
Query: 238 GDPRNPNLGAPGS 276
G R+PNLG P S
Sbjct: 79 GKSRDPNLGKPWS 91
>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 579
Score = 26.6 bits (56), Expect = 5.7
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +1
Query: 136 GGARGPCPGTEPPA*PCGRQAGDHR-DHRPRRQRTGDPRNPNLGAPGSELSERN 294
GG R P G P Q G H H R + G R P G PG+ +N
Sbjct: 117 GGQRPPYGGQNPQQGGQMSQYGGHNPQHGGHRPQYGGQR-PQYGGPGNNYQNQN 169
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 26.6 bits (56), Expect = 5.7
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -2
Query: 272 PGAPRFGLRG--SPVRWRRGR*SL*SPACRPQGQ--AGGSVPGQGPRAPPR 132
PG P FG RG P RG P P+G GG PG GP + PR
Sbjct: 49 PGGPGFGGRGPRGPGFGPRGP----GPWSGPRGPRPGGGGGPGPGPWSGPR 95
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 230 SAQETLATRTWAPPAPSSVRGTS 298
S+ T +TR+W+ P+ SS GTS
Sbjct: 129 SSSTTSSTRSWSRPSSSSGTGTS 151
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 190 RQAGDHRDHRPRR--QRTGDPRNP-NLGAPGSELSER 291
++ D RD + + GD ++P N+ +PG+ LSER
Sbjct: 1106 QEGSDERDEQSHTDSEANGDNKDPENIPSPGTSLSER 1142
>At5g21940.1 68418.m02547 expressed protein supported by full length
cDNA GI:22531282 from [Arabidopsis thaliana]
Length = 264
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 230 SAQETLATRTWAPPAPSSVRGTSAPSASCGN 322
++ E+ TW P+PS +S+PS+S +
Sbjct: 12 NSDESPVMHTWFSPSPSPSDSSSSPSSSASS 42
>At5g01550.1 68418.m00070 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 688
Score = 25.8 bits (54), Expect = 9.9
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +1
Query: 205 HRDHRPRRQRTGDPRNPNLGAPG-SELSERNKRT-----IGILRQLFPSLTQN 345
HRD +P D NP LG G + L ER ++ +G + + P L +N
Sbjct: 488 HRDIKPSNVLIEDDMNPRLGDFGLARLYERGSQSNTTVVVGTIGYMAPELARN 540
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,233,535
Number of Sequences: 28952
Number of extensions: 149900
Number of successful extensions: 417
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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