Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30690
         (493 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    27   0.092
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   1.1  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    23   2.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   4.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.0  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 0.092
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 234 CDDDY*CPSSAGYQDSSPN*PSFP-CRGPLACSWRPALWPPPCDT*TREMHTGHFLAPV 61
           C  +Y C  +    D+     S P CR  L CS   ALWP P    T E+H G  L  V
Sbjct: 29  CKSNY-CQKAPITPDTEATGLSLPACR--LFCSEAAALWPKP----TGEVHVGTTLVKV 80


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 201 QPKTDTSNHHHIFVGDLYQKSKQTYSERPSLHLVRY 308
           +PK   S+H   F+ + +Q S +    +P+L  +R+
Sbjct: 256 KPKCVLSDHGTQFISNTWQNSLRAADIQPTLSSIRH 291


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 219 SNHHHIFVGDLYQKSKQ 269
           +NH ++ VGDL QK  Q
Sbjct: 13  ANHKNVQVGDLVQKIAQ 29


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 450  FVRMDLDPSNWPFIAWMAASASAF 379
            FV +DLDP+ W  +   A + + F
Sbjct: 1549 FVLLDLDPACWYHLRVTAHNNAGF 1572


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 198 NQPKTDTSNHHH 233
           +QP TD S+ HH
Sbjct: 125 SQPPTDNSHVHH 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,068
Number of Sequences: 336
Number of extensions: 2620
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)