Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30690
(493 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 55 7e-09
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 55 7e-09
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 49 4e-07
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 48 8e-07
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 48 1e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 45 7e-06
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 4e-05
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 41 9e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 41 9e-05
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 41 9e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 40 2e-04
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 40 2e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 4e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 39 4e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 4e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 39 5e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 8e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.001
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 38 0.001
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 37 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.002
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 36 0.003
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 36 0.004
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 34 0.010
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 34 0.013
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 33 0.023
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 31 0.071
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 29 0.38
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.50
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 28 0.66
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 28 0.66
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 28 0.88
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 1.5
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 2.0
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 2.0
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 4.7
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 4.7
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 25 6.2
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 25 8.2
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.2
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 54.8 bits (126), Expect = 7e-09
Identities = 27/71 (38%), Positives = 38/71 (53%)
Frame = +2
Query: 266 TNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIR 445
T L E F+ FG I +C + P T SKGY FVSF +A AI +NG L G + +
Sbjct: 434 TQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLF 493
Query: 446 TNWSTRKPPAK 478
N++ ++ K
Sbjct: 494 VNYAEKREDRK 504
Score = 32.3 bits (70), Expect = 0.041
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +2
Query: 263 ETNILREAFAPFGEISNCRIV--RDPLTLKSKG---YAFVSFVKKADAEAAIQAMNGQLL 427
+++ L E F PFG S ++ + + SK +AF++F K A+ AI ++NG
Sbjct: 32 QSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADNAIASLNGSSF 91
Query: 428 GSRSIRTNWS 457
+++ ++
Sbjct: 92 QGNTLKVEYT 101
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 54.8 bits (126), Expect = 7e-09
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +2
Query: 272 ILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTN 451
+L E F G +++ R+ RD +T +S GYA+V+F D E A+ +N L+ R R
Sbjct: 95 MLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIM 154
Query: 452 WSTRKPPAKGVNEG 493
WS R P + + G
Sbjct: 155 WSQRDPSLRKMGTG 168
Score = 48.4 bits (110), Expect = 6e-07
Identities = 23/61 (37%), Positives = 35/61 (57%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
I+ L + F+ FG+I +C++ D L +KGY FV F A AAI+ +NG LL +
Sbjct: 179 IDNKALHDTFSAFGKILSCKVAVDELG-NAKGYGFVHFDSVESANAAIEHVNGMLLNDKK 237
Query: 440 I 442
+
Sbjct: 238 V 238
Score = 32.7 bits (71), Expect = 0.031
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMN 415
EI + F FGEI++ +V+D K +G+ FV++ A+ A+ +N
Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELN 322
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 48.8 bits (111), Expect = 4e-07
Identities = 22/66 (33%), Positives = 39/66 (59%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L++ F+ FG +++ RI+R+P+T S+G+ F+SF +A +AI +N Q R +
Sbjct: 117 LQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK 176
Query: 455 STRKPP 472
+ R P
Sbjct: 177 AKRSRP 182
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 48.0 bits (109), Expect = 8e-07
Identities = 26/60 (43%), Positives = 37/60 (61%)
Frame = +2
Query: 263 ETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
E++I RE F +G I R+VR+ +T KS GYAFV F ++ D + A +A G +L R I
Sbjct: 113 ESDIERE-FTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRI 171
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 47.6 bits (108), Expect = 1e-06
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +2
Query: 296 FGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNWSTRKPPA 475
+ + +I+ DP T S+GY FV F + D ++A+ M GQ+ G R IR +T K A
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA 269
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 44.8 bits (101), Expect = 7e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
++ +L + F+ G++ V +SKGY FVS+ A+AAI+AMN Q L ++
Sbjct: 110 VDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKP 169
Query: 440 IRTNWSTRKPPAKGVNEG 493
I +++ ++ KG G
Sbjct: 170 ITVSYAFKR-EGKGERHG 186
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 42.3 bits (95), Expect = 4e-05
Identities = 23/64 (35%), Positives = 36/64 (56%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+ ++L AF PFGEI + + R + + YAFV F + DA+ A++ MN +L R
Sbjct: 17 VTESLLYNAFIPFGEIISVALHRKEKAV-DRSYAFVEFDEPEDAKEAMENMNYSILCDRC 75
Query: 440 IRTN 451
IR +
Sbjct: 76 IRVS 79
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 41.1 bits (92), Expect = 9e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L + F+PFG I + + P + SKGY FV+F + A A +NG ++G + I +
Sbjct: 400 LEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCF 459
Query: 455 STRK 466
+ RK
Sbjct: 460 AERK 463
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.1 bits (92), Expect = 9e-05
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L + F G + RI +P T +SKG+ V F + DA ++I+ +NG G R ++ ++
Sbjct: 296 LLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSY 354
Query: 455 STRKPPAKGV 484
+ P V
Sbjct: 355 AHYATPLPAV 364
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 41.1 bits (92), Expect = 9e-05
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLL--GSRSIRTNWST 460
F PFG + C I P T S+ +AFV + DAE A ++G+ L G +R W+
Sbjct: 27 FEPFGPLIRCDIPI-PRTRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAK 85
Query: 461 RKPPA 475
+ PP+
Sbjct: 86 QPPPS 90
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNWS 457
F+ FG+I +C+++RD T S YAF+ F K E A M L+ I ++S
Sbjct: 264 FSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFS 320
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 39.9 bits (89), Expect = 2e-04
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 296 FGE-ISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIR 445
FGE +++ R+V DPLT +S+G+ +V F + AD +A A++G+ L R +R
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEF-ETADTLSAALALSGEDLMGRPVR 163
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.1 bits (87), Expect = 4e-04
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L F+ G I + +V +P T +++GY FV+F DA+ A + + + L R +R ++
Sbjct: 21 LTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDF 80
Query: 455 ST 460
+T
Sbjct: 81 AT 82
Score = 31.1 bits (67), Expect = 0.094
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L F+ FG++ +I + G+AFV + AE A+ ++NG + R I +W
Sbjct: 124 LEPHFSKFGKVREIKIPTKGGG-RMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
Query: 455 STRK 466
+ K
Sbjct: 183 AVSK 186
Score = 24.6 bits (51), Expect = 8.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 344 KSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
+SKG+ F+ F+ A A++ +NG+ + + I
Sbjct: 537 RSKGFGFMQFISHKYALMALRWLNGREITVKKI 569
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 39.1 bits (87), Expect = 4e-04
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L AF G+I + R+ DP + + KG+ +V+F A+ ++ MNG + R R ++
Sbjct: 382 LSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDF 440
Query: 455 ST 460
ST
Sbjct: 441 ST 442
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.1 bits (87), Expect = 4e-04
Identities = 22/78 (28%), Positives = 40/78 (51%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
++ L +AF+ + + ++VRD K++G+ FVSF A + NG+ +GSR
Sbjct: 40 DVNDESLYQAFSEYPSLVKTKVVRDREG-KTRGFGFVSFKDSDQFLKAWREKNGKYIGSR 98
Query: 437 SIRTNWSTRKPPAKGVNE 490
++ + +T VNE
Sbjct: 99 PVKLSRATSDVKPNEVNE 116
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 38.7 bits (86), Expect = 5e-04
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSF 373
E + LR+ F FGE+ +C ++RD T +S+G+ F++F
Sbjct: 173 ETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.9 bits (84), Expect = 8e-04
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLG 430
L + F G + + +IVRD ++ +SKG A+V F + +AAI +LLG
Sbjct: 256 LYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLG 307
Score = 37.5 bits (83), Expect = 0.001
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIR 445
++ F PFG+I + RD +SKG+ ++ + A A++ MNG L R++R
Sbjct: 356 VKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEKMNGFDLAGRNMR 411
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 281 EAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQ 421
E PFG++ + +++++ SKG+ F F +DAE AI ++G+
Sbjct: 328 ELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGK 374
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 37.5 bits (83), Expect = 0.001
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 350 KGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNWSTRKPPAK 478
+G AF +F +A+ +Q +NG + R +R W + PPA+
Sbjct: 273 RGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAE 315
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.1 bits (82), Expect = 0.001
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW-STR 463
F+ FGE + +VRD T KSKG+AF+ + + A+ M L R +R + ++
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASY 110
Query: 464 KPPAK 478
K P K
Sbjct: 111 KVPQK 115
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 36.7 bits (81), Expect = 0.002
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +2
Query: 281 EAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNWST 460
+ F G + + ++V DP + + KGY F + A A +A++ +N G+R +R ++ T
Sbjct: 23 DIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVDFPT 82
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 35.9 bits (79), Expect = 0.003
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 272 ILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLG-SRSIRT 448
I+ FA +G+I R+ L S+G AF++++ +A+A+ A +AM Q L +
Sbjct: 190 IVSRHFAEWGDIERIRV------LNSRGIAFITYLNEANAQFAKEAMAHQSLDHDECLNV 243
Query: 449 NWSTRKP 469
W+T P
Sbjct: 244 RWATTDP 250
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 35.5 bits (78), Expect = 0.004
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E E L F G I RIVRDP T KG+A++ F + A+ ++ R
Sbjct: 280 EAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGR 339
Query: 437 SIR 445
++R
Sbjct: 340 TLR 342
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 34.3 bits (75), Expect = 0.010
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +2
Query: 308 SNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNWSTRKPPA 475
++ +I+ DP+T S+ Y FV F + + + A+ M G L R +R + ++ K A
Sbjct: 210 TSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRA 265
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 33.9 bits (74), Expect = 0.013
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LR+ F FG I + +D T ++KG+AFVS+ + A A ++G + +R +
Sbjct: 218 LRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEF 277
Query: 455 S 457
S
Sbjct: 278 S 278
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 33.1 bits (72), Expect = 0.023
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 317 RIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
R VR L G AFV+F + D + AI+ +NG+ L R I
Sbjct: 78 RRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREI 119
Score = 31.5 bits (68), Expect = 0.071
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 344 KSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
+ +G+ FVSF D AI+ MNG+ +G ++
Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTL 288
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.5 bits (68), Expect = 0.071
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQA 409
L+ F PFG++ + D T KG+A++ F DA+ A++A
Sbjct: 339 LKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF---HDADDAVRA 380
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 29.1 bits (62), Expect = 0.38
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 296 FGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAM 412
FG++S+ + + D T KGY F F ++ A I AM
Sbjct: 319 FGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAM 357
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 28.7 bits (61), Expect = 0.50
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFV 376
F G++ + RI D + + KGYAFV F+
Sbjct: 112 FKRAGQVPSVRIPTDKTSGRQKGYAFVEFI 141
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.3 bits (60), Expect = 0.66
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L+E F G+I R++ T K KG+ FV F D + ++AM LG S R +
Sbjct: 244 LKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF---PDIDTCMKAME---LGHNSWRLEY 297
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 28.3 bits (60), Expect = 0.66
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 272 ILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTN 451
IL F +G++ + V+ TL+ +G AFV F +A A++ + G L + +
Sbjct: 45 ILEHLFGSYGKVID---VQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQ 101
Query: 452 WSTRK 466
+S K
Sbjct: 102 YSKSK 106
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 0.88
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 12 LCTLFGQIGDVKGCKIIREPGNDPYAFLEF 101
L LF + G V CKII + +AFL F
Sbjct: 382 LVDLFSKYGKVIDCKIIHQSKKPAFAFLRF 411
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 281 EAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNG 418
E + FG R +R T++++G AFV + DA A + ++G
Sbjct: 27 EMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.6 bits (56), Expect = 2.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAA 400
LR F FGE+ + + +P T S G +SF K++ A
Sbjct: 110 LRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVA 151
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.6 bits (56), Expect = 2.0
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
F +G++ + RI + + KG+ +V DAE A+ A G+ LG+R
Sbjct: 777 FRDYGQVESVRIPKR--FNQHKGFGYVVMTTNQDAENALSAA-GKQLGNR 823
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 4.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAM 412
+RE PFG I +IV + + AFV F+ A A A+Q +
Sbjct: 222 IREDLEPFGPIDQIKIVTE------RNIAFVHFLNIAAAIKAVQEL 261
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.4 bits (53), Expect = 4.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 232 TYSWAICIRNRNKHTPRGLRSIW 300
T+SW IC+ PR L+ W
Sbjct: 2259 THSWIICVFGVGLGAPRWLQQFW 2281
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.0 bits (52), Expect = 6.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 288 KASRSMFVSISDTDRPRICD 229
+A++ + IS+TDRPR+ D
Sbjct: 604 EAAQGLLEQISETDRPRLSD 623
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 24.6 bits (51), Expect = 8.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 296 FGE--ISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAM 412
FGE I RI++D ++ K A ++ +++ D +QAM
Sbjct: 436 FGERAIRLLRIIKDKGKIEEKQLANIALLRQRDLRTVLQAM 476
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 24.6 bits (51), Expect = 8.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 213 PSSAGYQDSSPN*PSFPCRGPLACSWRP 130
PSS GY S PS P P + S+ P
Sbjct: 1560 PSSPGYSTSPAYMPSSPSYSPTSPSYSP 1587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,964
Number of Sequences: 5004
Number of extensions: 44129
Number of successful extensions: 149
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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