Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30690
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   1.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.4  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 223 LLVSVFGWLPGLVAQLTFISL 161
           L V+V  W  G+ A LT+ISL
Sbjct: 79  LFVTVPRWRNGIPATLTYISL 99


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -1

Query: 361 SITLGFER*WIAYYATVRYLTKWSEGLSEYVCF 263
           ++TL  +  + +YY+ +  LT  +  +  Y+C+
Sbjct: 628 NVTLSTKCPYPSYYSYIGVLTLVATSMPTYICY 660



 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 268 KHTPRGLRSIW 300
           KH PRG  ++W
Sbjct: 91  KHNPRGKDALW 101


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 334 INAQIQGLCFCIICKE 381
           IN  + G   C +CK+
Sbjct: 15  INVLLHGQVICFVCKD 30


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 491 LHSHLSLVVYALTSSYVW 438
           L S L+ +VY + + ++W
Sbjct: 150 LFSFLNTIVYCVPAGWIW 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,265
Number of Sequences: 438
Number of extensions: 3160
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)