Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30690
(493 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 64 6e-11
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 63 1e-10
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 62 1e-10
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 60 6e-10
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 58 2e-09
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 58 4e-09
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 57 7e-09
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 56 1e-08
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 56 1e-08
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 56 1e-08
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 56 2e-08
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 55 2e-08
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 55 2e-08
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 55 3e-08
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 55 3e-08
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 54 4e-08
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 54 5e-08
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 54 5e-08
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 54 7e-08
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 54 7e-08
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 53 9e-08
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 53 9e-08
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 53 1e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 52 2e-07
At5g51300.1 68418.m06359 splicing factor-related contains simila... 52 2e-07
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 52 3e-07
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 52 3e-07
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 51 4e-07
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 51 4e-07
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 51 5e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 51 5e-07
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 51 5e-07
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 50 6e-07
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 50 6e-07
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 50 6e-07
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 50 6e-07
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 50 6e-07
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 50 6e-07
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 49 1e-06
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 48 3e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 48 3e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 48 3e-06
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 48 5e-06
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 47 6e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 47 6e-06
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 46 1e-05
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 46 1e-05
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 46 1e-05
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 46 1e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 46 1e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 46 1e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 46 1e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 46 1e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 1e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 46 1e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 46 1e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 45 2e-05
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 45 3e-05
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 44 4e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 44 7e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 44 7e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 44 7e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 44 7e-05
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 44 7e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 44 7e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 44 7e-05
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 43 1e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 1e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 43 1e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 43 1e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 43 1e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 43 1e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 43 1e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 42 2e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 42 2e-04
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 42 2e-04
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 42 2e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 42 2e-04
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 42 2e-04
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 42 2e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 42 3e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 3e-04
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 42 3e-04
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 42 3e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 42 3e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 41 4e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 41 4e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 41 5e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 41 5e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 41 5e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 41 5e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 40 7e-04
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 40 7e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 40 7e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 40 7e-04
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 40 0.001
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 40 0.001
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 40 0.001
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 40 0.001
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 40 0.001
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 39 0.002
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 39 0.002
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 39 0.002
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 39 0.002
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 38 0.003
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 38 0.003
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 38 0.004
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 38 0.004
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 38 0.004
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 38 0.004
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 38 0.005
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 38 0.005
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 38 0.005
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 37 0.006
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 37 0.006
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 37 0.006
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 37 0.006
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 36 0.011
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 36 0.011
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 36 0.011
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 36 0.015
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 35 0.026
At2g47310.1 68415.m05906 flowering time control protein-related ... 35 0.026
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.034
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 35 0.034
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 35 0.034
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 35 0.034
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 35 0.034
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 34 0.045
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 34 0.045
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 34 0.045
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 34 0.045
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 34 0.045
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 34 0.060
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 33 0.079
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 33 0.10
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.14
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 33 0.14
At4g10610.1 68417.m01735 RNA-binding protein, putative 32 0.18
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 32 0.18
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 32 0.18
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 32 0.24
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 32 0.24
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 32 0.24
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 32 0.24
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 31 0.32
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 31 0.32
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 31 0.56
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 31 0.56
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 30 0.74
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 30 0.97
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 30 0.97
At1g05400.1 68414.m00548 hypothetical protein contains Pfam prof... 30 0.97
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 29 1.7
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 29 2.2
At1g79100.1 68414.m09223 arginine/serine-rich protein-related si... 29 2.2
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 28 3.0
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 28 3.0
At4g08690.1 68417.m01432 SEC14 cytosolic factor family protein /... 28 3.0
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 28 3.0
At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containi... 28 3.9
At1g68640.1 68414.m07843 bZIP family transcription factor (PERIA... 28 3.9
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 27 5.2
At3g24440.1 68416.m03067 fibronectin type III domain-containing ... 27 5.2
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 27 5.2
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 27 5.2
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 27 5.2
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 27 5.2
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 27 5.2
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 27 6.9
At5g36780.1 68418.m04406 hypothetical protein 27 9.1
At5g36690.1 68418.m04391 hypothetical protein 27 9.1
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 27 9.1
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 27 9.1
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 63.7 bits (148), Expect = 6e-11
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E+ L ++F+ F S+ R++ D T +S+G+ FVSF + DA+ AI MNG+ L SR
Sbjct: 154 EVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSR 213
Query: 437 SIRTNWSTR 463
IR NW+T+
Sbjct: 214 QIRCNWATK 222
Score = 48.0 bits (109), Expect = 3e-06
Identities = 28/83 (33%), Positives = 43/83 (51%)
Frame = +3
Query: 3 EVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNW 182
E L +F G V+ K+IR+ + Y F+ + +N R + + +KVNW
Sbjct: 72 EPLLQEIFTSTGPVESSKLIRKDKSS-YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNW 130
Query: 183 ATSPGNQPKTDTSNHHHIFVGDL 251
A + G + DTS+H +IFVGDL
Sbjct: 131 AYATGQ--REDTSSHFNIFVGDL 151
Score = 36.3 bits (80), Expect = 0.011
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
++ +L+E F G + + +++R Y FV + + A AI ++NG+ L +
Sbjct: 69 QVTEPLLQEIFTSTGPVESSKLIRKD----KSSYGFVHYFDRRSAALAILSLNGRHLFGQ 124
Query: 437 SIRTNWS 457
I+ NW+
Sbjct: 125 PIKVNWA 131
Score = 30.3 bits (65), Expect = 0.74
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 320 IVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQ-LLGSRSIRTNWSTRKPP 472
++ + + KG+ FV + +A AIQ N Q L +R I+ +W + P
Sbjct: 292 VIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKCSWGNKPTP 343
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 62.9 bits (146), Expect = 1e-10
Identities = 29/70 (41%), Positives = 46/70 (65%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E+ ++L +AFA F + +++RD T K+KGY FVSF+ AD AA++ MNG+ +G+R
Sbjct: 147 EVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNR 206
Query: 437 SIRTNWSTRK 466
I+ S+ K
Sbjct: 207 PIKLRKSSWK 216
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 62.5 bits (145), Expect = 1e-10
Identities = 28/69 (40%), Positives = 44/69 (63%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E+ L ++F+ F S+ R++ D T +S+G+ FVSF + DA+ AI MNG+ + SR
Sbjct: 158 EVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSR 217
Query: 437 SIRTNWSTR 463
IR NW+T+
Sbjct: 218 QIRCNWATK 226
Score = 56.8 bits (131), Expect = 7e-09
Identities = 29/83 (34%), Positives = 45/83 (54%)
Frame = +3
Query: 3 EVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNW 182
E+ L +F G ++ CK+IR+ + Y F+ + +N R + + MKVNW
Sbjct: 76 EILLQEIFASTGPIESCKLIRKDKSS-YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNW 134
Query: 183 ATSPGNQPKTDTSNHHHIFVGDL 251
A + G + DTS+H +IFVGDL
Sbjct: 135 AYATGQ--REDTSSHFNIFVGDL 155
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +2
Query: 272 ILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTN 451
+L+E FA G I +C+++R Y FV + + A AI +NG+ + + ++ N
Sbjct: 78 LLQEIFASTGPIESCKLIRKD----KSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVN 133
Query: 452 WS 457
W+
Sbjct: 134 WA 135
Score = 33.9 bits (74), Expect = 0.060
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 320 IVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQ-LLGSRSIRTNWSTRKPPA 475
++ + + KG+ FV + +A AIQ N Q L SR IR +W + P+
Sbjct: 296 VIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPS 348
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 60.5 bits (140), Expect = 6e-10
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L E F PFG ++ C + D T S+G+ FVSFV + DA+ AI +NG + +R W
Sbjct: 190 LMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEW 249
Query: 455 STRK 466
ST K
Sbjct: 250 STPK 253
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 58.4 bits (135), Expect = 2e-09
Identities = 27/69 (39%), Positives = 43/69 (62%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E+ +L F+ + S+ R++ D T +S+G+ FVSF + DA+ AI + G+ LGSR
Sbjct: 149 EVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSR 208
Query: 437 SIRTNWSTR 463
IR NW+T+
Sbjct: 209 QIRCNWATK 217
Score = 51.6 bits (118), Expect = 3e-07
Identities = 29/83 (34%), Positives = 44/83 (53%)
Frame = +3
Query: 3 EVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNW 182
E L +F G V+ CK+IR+ + Y F+ + +N R + + +KVNW
Sbjct: 67 EPLLQEVFAGTGPVESCKLIRKEKSS-YGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNW 125
Query: 183 ATSPGNQPKTDTSNHHHIFVGDL 251
A + G + DTS+H +IFVGDL
Sbjct: 126 AYASGQ--REDTSSHFNIFVGDL 146
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
++ +L+E FA G + +C+++R + Y FV + + A AI ++NG+ L +
Sbjct: 64 QVTEPLLQEVFAGTGPVESCKLIRK----EKSSYGFVHYFDRRSAGLAILSLNGRHLFGQ 119
Query: 437 SIRTNWS 457
I+ NW+
Sbjct: 120 PIKVNWA 126
Score = 30.7 bits (66), Expect = 0.56
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 320 IVRDPLTLKSKGYAFVSFVKKADAEAAIQAMN-GQLLGSRSIRTNWSTRKPPA 475
++ + + KG+ FV + +A AIQ N L R ++ +W ++ PA
Sbjct: 287 VIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKPTPA 339
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 57.6 bits (133), Expect = 4e-09
Identities = 26/78 (33%), Positives = 47/78 (60%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
++ + LREAF +GE+ + R++ D T +S+G+ FV+F A +AIQA++G+ L R
Sbjct: 51 MDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRV 110
Query: 440 IRTNWSTRKPPAKGVNEG 493
++ N++ + G G
Sbjct: 111 VKVNYANDRTSGGGFGGG 128
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 56.8 bits (131), Expect = 7e-09
Identities = 29/83 (34%), Positives = 45/83 (54%)
Frame = +3
Query: 3 EVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNW 182
E+ L +F G ++ CK+IR+ + Y F+ + +N R + + MKVNW
Sbjct: 76 EILLQEIFASTGPIESCKLIRKDKSS-YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNW 134
Query: 183 ATSPGNQPKTDTSNHHHIFVGDL 251
A + G + DTS+H +IFVGDL
Sbjct: 135 AYATGQ--REDTSSHFNIFVGDL 155
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISN----CRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQL 424
E+ L ++F+ F S+ R++ D T +S+G+ FVSF + DA+ AI MNG+
Sbjct: 158 EVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKW 217
Query: 425 LGSRSIRTNWSTR 463
+ SR IR NW+T+
Sbjct: 218 VSSRQIRCNWATK 230
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +2
Query: 272 ILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTN 451
+L+E FA G I +C+++R Y FV + + A AI +NG+ + + ++ N
Sbjct: 78 LLQEIFASTGPIESCKLIRKD----KSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVN 133
Query: 452 WS 457
W+
Sbjct: 134 WA 135
Score = 33.9 bits (74), Expect = 0.060
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 320 IVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQ-LLGSRSIRTNWSTRKPPA 475
++ + + KG+ FV + +A AIQ N Q L SR IR +W + P+
Sbjct: 300 VIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPS 352
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 EIETNILREAFAPFGEI-SNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS 433
+++ +L + F+ FG I SN +I+RDP T S+G+ F+S+ ++AAI++M GQ L +
Sbjct: 122 DVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSN 181
Query: 434 RSIRTNWSTRKPPAKGVNEG 493
R I +++ +K KG G
Sbjct: 182 RQITVSYAYKK-DTKGERHG 200
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
++ +L E F G + N + +D +T + Y F+ + + DA+ AI+ +N L +
Sbjct: 35 QLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGK 94
Query: 437 SIRTN 451
IR N
Sbjct: 95 PIRVN 99
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 56.0 bits (129), Expect = 1e-08
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LR+AFA FG++ + +++ D T +S+G+ FV+F + A AAI M+G+ L R IR N
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110
Query: 455 STRKPPA 475
+ +P A
Sbjct: 111 ANDRPSA 117
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 56.0 bits (129), Expect = 1e-08
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LR+AFA FG++ + +++ D T +S+G+ FV+F + A AAI M+G+ L R IR N
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110
Query: 455 STRKPPA 475
+ +P A
Sbjct: 111 ANDRPSA 117
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 55.6 bits (128), Expect = 2e-08
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LREAF+ +GE+ + +I+ D T +S+G+AFV+F +A A+Q ++GQ L R IR N+
Sbjct: 50 LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNY 108
Query: 455 STRK 466
+T +
Sbjct: 109 ATER 112
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 55.2 bits (127), Expect = 2e-08
Identities = 26/67 (38%), Positives = 41/67 (61%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L++AF FGE++ ++ D T +S+G+ FVSF + A AI+ M+G+ L R IR N
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL 110
Query: 455 STRKPPA 475
+T + A
Sbjct: 111 ATERSSA 117
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 24 FGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNWATSP 194
F G+V +I RE G + F+ F+C M+ + + ++++VN AT
Sbjct: 55 FTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
Query: 195 GNQPKT 212
+ P++
Sbjct: 115 SSAPRS 120
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 55.2 bits (127), Expect = 2e-08
Identities = 26/67 (38%), Positives = 41/67 (61%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L++AF FGE++ ++ D T +S+G+ FVSF + A AI+ M+G+ L R IR N
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL 110
Query: 455 STRKPPA 475
+T + A
Sbjct: 111 ATERSSA 117
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 24 FGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNWATSP 194
F G+V +I RE G + F+ F+C M+ + + ++++VN AT
Sbjct: 55 FTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
Query: 195 GNQPKT 212
+ P++
Sbjct: 115 SSAPRS 120
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 54.8 bits (126), Expect = 3e-08
Identities = 27/68 (39%), Positives = 43/68 (63%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LRE FAPFG I++C+++RDP + S+G FV+F +A AI MNG+++ ++ +
Sbjct: 343 LREHFAPFGTITSCKVMRDPSGV-SRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVAL 401
Query: 455 STRKPPAK 478
+ RK K
Sbjct: 402 AQRKEDRK 409
Score = 51.2 bits (117), Expect = 4e-07
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L EAF G++ + R+ RD T +S GY +V++ DA A+ +N L R+IR +
Sbjct: 61 LFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMY 120
Query: 455 STRKP 469
S R P
Sbjct: 121 SVRDP 125
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/61 (37%), Positives = 35/61 (57%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
I+ L E F+ FG I +C++ DP + +SKGY FV + A+ AI +NG LL +
Sbjct: 144 IDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQ 202
Query: 440 I 442
+
Sbjct: 203 V 203
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQ 421
L + F FG ++C I+RD KSKG+ FV+F DA A+ A+NG+
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEG-KSKGFGFVNFENSDDAARAVDALNGK 287
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 54.8 bits (126), Expect = 3e-08
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
I+ L E F+ FG I +C++ D +T +SKGY FV F K+ A+AAI +NG L+ +
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQ 205
Query: 440 I 442
+
Sbjct: 206 V 206
Score = 41.9 bits (94), Expect = 2e-04
Identities = 17/69 (24%), Positives = 42/69 (60%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
++ L+E F+ +G +++ +++ +P + S+G+ FV++ +A A+ MNG+++G +
Sbjct: 343 VDDEKLKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEALRALSEMNGKMIGRKP 401
Query: 440 IRTNWSTRK 466
+ + RK
Sbjct: 402 LYIALAQRK 410
Score = 37.5 bits (83), Expect = 0.005
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L + F + + R+ RD +S GYA+++F DA A++A+N L R IR
Sbjct: 65 LFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIML 123
Query: 455 STRKPPAKGVNEG 493
S R P + +G
Sbjct: 124 SNRDPSTRLSGKG 136
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 54.4 bits (125), Expect = 4e-08
Identities = 21/56 (37%), Positives = 39/56 (69%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
LR+ F+PFG+I R++RD T + KG+ F++F + DA A+++++G+++ R I
Sbjct: 23 LRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLI 78
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 54.0 bits (124), Expect = 5e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LRE FA FG I++C+++RDP + SKG FV+F ++A + MNG+++G + +
Sbjct: 344 LRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVAL 402
Query: 455 STRK 466
+ RK
Sbjct: 403 AQRK 406
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
++ L EAF+ G I +C++ D + +S+GY FV F + A+ AI+ +NG++L +
Sbjct: 145 VDNKTLHEAFSGCGTIVSCKVATDHMG-QSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQ 203
Query: 440 I 442
I
Sbjct: 204 I 204
Score = 44.0 bits (99), Expect = 6e-05
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L + F ++ + R+ RD T S GY +V++ DAE A+Q +N L + IR +
Sbjct: 62 LYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITY 121
Query: 455 STRKPPAK 478
S+R A+
Sbjct: 122 SSRDSSAR 129
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 54.0 bits (124), Expect = 5e-08
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E + + AF FGEI N + D + KGYA + + KK +A++AI AMNG L ++
Sbjct: 105 ETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQ 164
Query: 437 SIRTNWSTRKPPAKG 481
++ +W+ P+ G
Sbjct: 165 NVSVDWAFSSGPSGG 179
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 53.6 bits (123), Expect = 7e-08
Identities = 23/59 (38%), Positives = 39/59 (66%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTN 451
L++AF+ F ++ R++ + +T +S+GY FV+F+ + A +AI AMNGQ L +I N
Sbjct: 47 LKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVN 105
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 53.6 bits (123), Expect = 7e-08
Identities = 25/61 (40%), Positives = 37/61 (60%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
I+ L E F+ FG I +C++ D + +SKGY FV F K+ A+AAI +NG LL +
Sbjct: 143 IDNKALYETFSSFGTILSCKVAMDVVG-RSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQ 201
Query: 440 I 442
+
Sbjct: 202 V 202
Score = 44.0 bits (99), Expect = 6e-05
Identities = 18/64 (28%), Positives = 41/64 (64%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L+E F+ +G +++C+++ + L S+G+ FV++ +A A++ MNG+++G + +
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 402
Query: 455 STRK 466
+ RK
Sbjct: 403 AQRK 406
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 53.2 bits (122), Expect = 9e-08
Identities = 22/56 (39%), Positives = 38/56 (67%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
L++ F+ FG+++N +I+ + T +S GY +V F K DA++A++AMNG+ R I
Sbjct: 93 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFI 148
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 53.2 bits (122), Expect = 9e-08
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L E F PFG ++ + D T S+G+ FV+FV + DA+ AI +NG + +R W
Sbjct: 229 LMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEW 288
Query: 455 STRKP 469
+T +P
Sbjct: 289 ATPRP 293
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/75 (32%), Positives = 43/75 (57%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
+++ L + F+ G++ R+V D T +S+G+ FV+ + AI A++GQ L R
Sbjct: 254 DVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGR 313
Query: 437 SIRTNWSTRKPPAKG 481
+IR N + +PP +G
Sbjct: 314 AIRVNVAEERPPRRG 328
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 52.0 bits (119), Expect = 2e-07
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+E + L F+ FGEI ++++D +T SKGY FV + A A+QAMNG R+
Sbjct: 491 LEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRT 550
Query: 440 IRTNWSTRKPP 472
+ + + PP
Sbjct: 551 LAVRIAGKSPP 561
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 12 LCTLFGQIGDVKGCKIIREPGNDPYA 89
L TL G I D + C++ EPG+ YA
Sbjct: 350 LATLNGTIRDEEFCRLCGEPGHRQYA 375
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 52.0 bits (119), Expect = 2e-07
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+E + L F+ FGEI ++++D +T SKGY FV + A A+QAMNG R+
Sbjct: 491 LEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRT 550
Query: 440 IRTNWSTRKPP 472
+ + + PP
Sbjct: 551 LAVRIAGKSPP 561
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 12 LCTLFGQIGDVKGCKIIREPGNDPYA 89
L TL G I D + C++ EPG+ YA
Sbjct: 350 LATLNGTIRDEEFCRLCGEPGHRQYA 375
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 51.6 bits (118), Expect = 3e-07
Identities = 21/58 (36%), Positives = 40/58 (68%)
Frame = +2
Query: 269 NILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
++LREAF+ +G + + ++RD T +S+G+ FV++ ++AEAA+ M+G+ L R +
Sbjct: 17 DMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRV 74
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 51.6 bits (118), Expect = 3e-07
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLL--GS 433
++ L F+ GE+S+ +++R+ LT +S+GY FV F+ +A AE +Q +G ++
Sbjct: 119 MDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSD 178
Query: 434 RSIRTNWST 460
+ R NW++
Sbjct: 179 QPFRINWAS 187
Score = 46.0 bits (104), Expect = 1e-05
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LR+ F+ FGE+ + +I P+ KG FV F + AE AI+++NG ++G ++R +W
Sbjct: 337 LRQPFSQFGEVVSVKI---PV---GKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSW 390
Query: 455 STRKP 469
R P
Sbjct: 391 G-RSP 394
Score = 40.3 bits (90), Expect = 7e-04
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 272 ILREAFAP-FGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRT 448
+L E F+ + + + ++V D T +SKGY FV F + + A+ MNG +R +R
Sbjct: 217 LLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRV 276
Query: 449 NWSTRK 466
+T K
Sbjct: 277 GIATPK 282
Score = 35.9 bits (79), Expect = 0.015
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Frame = +3
Query: 3 EVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEFTCHXXXXXXXXXMNKRVV--LDKE 167
E +L + F G+V K+IR ++ Y F+EF + V+ D+
Sbjct: 121 ETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQP 180
Query: 168 MKVNWAT-SPGNQPKTDTSNHHHIFVGDL 251
++NWA+ S G + + +FVGDL
Sbjct: 181 FRINWASFSTGEKRAVENGPDLSVFVGDL 209
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 51.2 bits (117), Expect = 4e-07
Identities = 20/50 (40%), Positives = 37/50 (74%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQL 424
L++ F+ FG+++N +I+ + T +S GY +V F K DA++A++AMNG++
Sbjct: 74 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 51.2 bits (117), Expect = 4e-07
Identities = 26/79 (32%), Positives = 44/79 (55%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E+ +IL AF PFG+I + + D K + + FV+F+++ DA AA+ M+G L R
Sbjct: 23 EVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDGAELYGR 82
Query: 437 SIRTNWSTRKPPAKGVNEG 493
+ N++ + KG +G
Sbjct: 83 VLTVNYALPE-KIKGGEQG 100
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 50.8 bits (116), Expect = 5e-07
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +2
Query: 257 EIETNILREAF-APFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS 433
++ ++L E F A + + ++V D T +SKGY FV F +++ A+ MNGQ S
Sbjct: 183 DVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSS 242
Query: 434 RSIRTNWSTRKPP 472
R +RT + K P
Sbjct: 243 RPMRTGPAANKKP 255
Score = 41.1 bits (92), Expect = 4e-04
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = +3
Query: 3 EVFLCTLFGQIGDVKGCKIIREPGN---DPYAFLEFTCHXXXXXXXXXMNKRVVLDKEM- 170
E +L +FG G+ K+IR N + Y F+EF H N + E
Sbjct: 93 ENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQA 152
Query: 171 -KVNWATSPGNQPKTDTSNHHHIFVGDL 251
++NWA + + H +FVGDL
Sbjct: 153 FRLNWAQLGAGERRQAEGPEHTVFVGDL 180
Score = 40.3 bits (90), Expect = 7e-04
Identities = 24/68 (35%), Positives = 34/68 (50%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L+ F FGE+ + +I K FV + +A AE A+ +NG LG +SIR +W
Sbjct: 294 LKSVFGQFGELVHVKIPA------GKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSW 347
Query: 455 STRKPPAK 478
R P K
Sbjct: 348 G-RSPSNK 354
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/65 (35%), Positives = 39/65 (60%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LR AF FGE+ +I+ D ++ +SKGYAF+ + + A A++ MNG+++ I +
Sbjct: 298 LRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDV 357
Query: 455 STRKP 469
+ KP
Sbjct: 358 AKTKP 362
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/69 (33%), Positives = 44/69 (63%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
++ L++AF+ FGE++ RI D + +S+G+ FV F ++ DA +A AM+G+ L R
Sbjct: 52 VDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRP 111
Query: 440 IRTNWSTRK 466
+R +++ +
Sbjct: 112 LRISFALER 120
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 50.4 bits (115), Expect = 6e-07
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNG-QLLGSR 436
++ N L F+ GE+ + +++R+ +T + +GY F+ F+ A AE +Q NG Q+ G+
Sbjct: 35 VDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTE 94
Query: 437 -SIRTNWST 460
+ R NW++
Sbjct: 95 LTFRLNWAS 103
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/61 (39%), Positives = 38/61 (62%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L++AF+ GE+ +I P T KGY +V F + AE A+Q M GQ++G +++R +W
Sbjct: 253 LKKAFSQLGEVIYVKI---PAT---KGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISW 306
Query: 455 S 457
S
Sbjct: 307 S 307
Score = 47.2 bits (107), Expect = 6e-06
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 257 EIETNILREAF-APFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS 433
++ +L+E F + + ++V DP T +SKGY FV F ++++ A+ MNG +
Sbjct: 126 DVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCST 185
Query: 434 RSIRTNWSTRK 466
R +R + +T K
Sbjct: 186 RPMRISAATPK 196
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +3
Query: 3 EVFLCTLFGQIGDVKGCKIIREP--GN-DPYAFLEFTCHXXXXXXXXXMNKRVVLDKEM- 170
E +L + F Q G++ K+IR G + Y F+EF H N + E+
Sbjct: 37 ENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELT 96
Query: 171 -KVNWATSPGNQPKTDTSNHHHIFVGDL 251
++NWA S G+ K D H IFVGDL
Sbjct: 97 FRLNWA-SFGSGQKVDAGPDHSIFVGDL 123
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +3
Query: 24 FGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNWATSPG 197
F Q+G+V KI P Y +++F M +V+ + ++++W+ +PG
Sbjct: 257 FSQLGEVIYVKI---PATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPG 311
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 50.4 bits (115), Expect = 6e-07
Identities = 24/69 (34%), Positives = 40/69 (57%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L EAF+ G++ +IV D ++ +SKG+ FV+F +A+ A+ NGQ L R+I ++
Sbjct: 50 LSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDY 109
Query: 455 STRKPPAKG 481
+ K G
Sbjct: 110 AKAKQSLGG 118
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 50.4 bits (115), Expect = 6e-07
Identities = 21/58 (36%), Positives = 36/58 (62%)
Frame = +2
Query: 269 NILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
+ L+ F+ FGEI+ ++++D +SKGYAF+ F + DA AI+ M+ ++ R I
Sbjct: 54 DFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMI 111
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 50.4 bits (115), Expect = 6e-07
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+ +L F+ G++ + ++ R P T KS G+ FV+F + D EAAI A+N LL +
Sbjct: 188 VTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQK 247
Query: 440 IRTN 451
IR N
Sbjct: 248 IRVN 251
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 50.4 bits (115), Expect = 6e-07
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTN 451
L AFA +G++ + +I+ D T +S+G+ FV+F + + AI+ MNGQ L RSI N
Sbjct: 24 LETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 50.4 bits (115), Expect = 6e-07
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTN 451
L AFA +G++ + +I+ D T +S+G+ FV+F + + AI+ MNGQ L RSI N
Sbjct: 24 LETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 49.2 bits (112), Expect = 1e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
++ ++LRE FA FG+I + I +D L +GYAFV+F DA A + +NG GS+
Sbjct: 211 DVSEDLLREKFAEFGKIVSLAIAKDENRL-CRGYAFVNFDNPEDARRAAETVNGTKFGSK 269
Query: 437 SIRTNWSTRK 466
+ + +K
Sbjct: 270 CLYVGRAQKK 279
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +2
Query: 257 EIETN-ILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS 433
E TN +L++ F FG I +C++ KS+GY FV F ++ A AAIQ +N ++
Sbjct: 121 ESVTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLNSTIVAD 179
Query: 434 RSI 442
+ I
Sbjct: 180 KEI 182
Score = 33.5 bits (73), Expect = 0.079
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LR+ F+ G I++ +++ D KSKG+ FV F +A A++ +GQ+ + +
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKG-KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAI 378
Query: 455 STRKPPAK 478
+ +K K
Sbjct: 379 AQKKEDRK 386
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 21 LFGQIGDVKGCKIIR-EPGNDP-YAFLEFTCHXXXXXXXXXMNKRVVLDKEMKV 176
+F + G++ CK+ E G Y F++F +N +V DKE+ V
Sbjct: 131 MFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/79 (31%), Positives = 45/79 (56%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E+ L AF+ FG+I +C+I+ + T +S+G+ F++F + + +I+ M+G+ G R
Sbjct: 17 EVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDR 76
Query: 437 SIRTNWSTRKPPAKGVNEG 493
I N R P G ++G
Sbjct: 77 VISVN---RAEPKLGRDDG 92
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 48.0 bits (109), Expect = 3e-06
Identities = 24/69 (34%), Positives = 40/69 (57%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+ + L AF G++ R+V D T +S+GY FV + KA+ E A+++++G L R+
Sbjct: 188 VTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRA 247
Query: 440 IRTNWSTRK 466
IR N + K
Sbjct: 248 IRVNLAQGK 256
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/73 (20%), Positives = 34/73 (46%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+++ L + F ++ + T +S+G+AFV+ D I ++G R+
Sbjct: 96 VDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRA 155
Query: 440 IRTNWSTRKPPAK 478
++ N++ + P K
Sbjct: 156 LKVNFADKPKPNK 168
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLL--GS 433
++ L F+ E+S+ +++R+ T +S+GY FV F+ ++ AE A+Q+ +G +
Sbjct: 130 MDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAE 189
Query: 434 RSIRTNWSTRKPPAKGVNE 490
+ R NW++ K +E
Sbjct: 190 QPFRLNWASFSTGEKRASE 208
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 257 EIETNILREAFAP-FGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS 433
++ +L E FA + + ++V D T +SKGY FV F + + A+ MNG S
Sbjct: 223 DVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSS 282
Query: 434 RSIRTNWSTRKPPA 475
R +R +T K A
Sbjct: 283 RQMRVGIATPKRAA 296
Score = 41.5 bits (93), Expect = 3e-04
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L + F+ FGE+ + +I P+ KG FV F + AE AI +NG ++G ++R +W
Sbjct: 343 LMQPFSDFGEVVSVKI---PV---GKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSW 396
Query: 455 STRKP 469
R P
Sbjct: 397 G-RSP 400
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 47.6 bits (108), Expect = 5e-06
Identities = 25/68 (36%), Positives = 42/68 (61%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L++ F+ FGEI + +I P+ KG FV FV + +AE A++ +NG ++G +++R +W
Sbjct: 322 LKQPFSEFGEIVSVKI---PV---GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSW 375
Query: 455 STRKPPAK 478
R P K
Sbjct: 376 G-RNPANK 382
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 257 EIETNILREAFAP-FGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS 433
++ +L E F+ + + ++V D T +SKGY FV F + + A+ MNG S
Sbjct: 209 DVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSS 268
Query: 434 RSIRTNWST 460
R++R +T
Sbjct: 269 RAMRIGPAT 277
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 302 EISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS--RSIRTNWST 460
EI + +++R+ S+GY FV F A+ +Q NG + + + R NW++
Sbjct: 130 EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWAS 184
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 47.2 bits (107), Expect = 6e-06
Identities = 21/56 (37%), Positives = 37/56 (66%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
LR+ FAPF R+++D T + KG+ F++F + DA+ A++A+NG+++ R I
Sbjct: 87 LRQLFAPFA-----RLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 47.2 bits (107), Expect = 6e-06
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
LR+AF +G + ++V D + +S+G+ F++F +K + AI AMNG L R+I
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTI 78
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/65 (32%), Positives = 39/65 (60%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
+I +R F+ +G + +IV D +++ K Y FV+F + A+ AI+ M+G+ +G R
Sbjct: 17 DITEEAVRRVFSIYGSVLTVKIVNDR-SVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGR 75
Query: 437 SIRTN 451
++R N
Sbjct: 76 AVRVN 80
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/71 (32%), Positives = 41/71 (57%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
+ +T L EAF +GEI +C+ V D ++ KSKGY F+ + ++ A A++ + +GSR
Sbjct: 150 DTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQ-KKIGSR 208
Query: 437 SIRTNWSTRKP 469
+++ P
Sbjct: 209 MTACQLASKGP 219
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/71 (32%), Positives = 41/71 (57%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
+ +T L EAF +GEI +C+ V D ++ KSKGY F+ + ++ A A++ + +GSR
Sbjct: 150 DTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQ-KKIGSR 208
Query: 437 SIRTNWSTRKP 469
+++ P
Sbjct: 209 MTACQLASKGP 219
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/71 (32%), Positives = 41/71 (57%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
+ +T L EAF +GEI +C+ V D ++ KSKGY F+ + ++ A A++ + +GSR
Sbjct: 150 DTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQ-KKIGSR 208
Query: 437 SIRTNWSTRKP 469
+++ P
Sbjct: 209 MTACQLASKGP 219
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 46.4 bits (105), Expect = 1e-05
Identities = 18/56 (32%), Positives = 35/56 (62%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
L +AF+ +G++ ++ D + + KG+A+V+F K +AE A+ +N QL+ R +
Sbjct: 37 LTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/68 (36%), Positives = 41/68 (60%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L++ F FGEI + +I P+ KG FV FV + +AE A++ +NG ++G +++R +W
Sbjct: 320 LKQPFNEFGEIVSVKI---PV---GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSW 373
Query: 455 STRKPPAK 478
R P K
Sbjct: 374 G-RNPANK 380
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +2
Query: 257 EIETNILREAFAP-FGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS 433
++ N+L E F+ + + ++V D T +SKGY FV F + + A+ MNG S
Sbjct: 207 DVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSS 266
Query: 434 RSIRTNWST 460
R++R +T
Sbjct: 267 RAMRIGPAT 275
Score = 30.3 bits (65), Expect = 0.74
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 302 EISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS--RSIRTNWST 460
EI + +++R+ S+GY FV F A+ ++ NG + + + R NW++
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWAS 182
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/69 (30%), Positives = 42/69 (60%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNWSTRK 466
FA +G++ + I RD T S+G+AFV + K +A A++ ++G+++ R I ++
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Query: 467 PPAKGVNEG 493
P A+ +++G
Sbjct: 96 PNAEKISKG 104
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/69 (30%), Positives = 42/69 (60%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNWSTRK 466
FA +G++ + I RD T S+G+AFV + K +A A++ ++G+++ R I ++
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Query: 467 PPAKGVNEG 493
P A+ +++G
Sbjct: 96 PNAEKISKG 104
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/64 (32%), Positives = 40/64 (62%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L+E F+PFG +++ +++RDP SKG FV+F +A A+ ++G+++ S+ +
Sbjct: 148 LKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAI 206
Query: 455 STRK 466
+ RK
Sbjct: 207 AQRK 210
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/48 (37%), Positives = 32/48 (66%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNG 418
L+ AF +G+I++ +++D KSKG+ FV+F DA A++++NG
Sbjct: 45 LKNAFGEYGKITSAVVMKDGEG-KSKGFGFVNFENADDAARAVESLNG 91
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 46.0 bits (104), Expect = 1e-05
Identities = 23/60 (38%), Positives = 34/60 (56%)
Frame = +2
Query: 263 ETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
E+ I RE F +G I +V D LT K KGYAF+ ++ D +AA + +GQ + R +
Sbjct: 151 ESKIKRE-FESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRV 209
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L EAF+ G + C +V + + + +G+AFV F + D AI+ NG +G R I
Sbjct: 36 LEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQ 95
Query: 455 STRKP 469
+ +P
Sbjct: 96 AAHRP 100
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
++ F+ G + + I ++ T KG+AFV F K DA AI+ NG + G R I +W
Sbjct: 347 IKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDW 406
Query: 455 STRK 466
+ K
Sbjct: 407 AVPK 410
Score = 35.1 bits (77), Expect = 0.026
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAE-AAIQAMN-----GQLLGSR 436
+++ F FGE+ + +V +T + +G AFV F K ADA AAI A + G LL R
Sbjct: 577 VKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKF-KTADASVAAISAADTASGVGVLLKGR 635
Query: 437 SIRTNWSTRKPPAKGV 484
+ + K AK +
Sbjct: 636 QLNVMRAVGKKAAKDI 651
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/65 (30%), Positives = 38/65 (58%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
++++ L F+ G++ + R+V D T +S+G+ FV + + AI A++GQ L R
Sbjct: 217 DVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGR 276
Query: 437 SIRTN 451
+I+ N
Sbjct: 277 AIKVN 281
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 45.2 bits (102), Expect = 2e-05
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLL 427
LR AFA FGE+++ ++V D ++ SKG+ FV + D+ I M+G+ L
Sbjct: 72 LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFL 122
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
+ F FGE+ + +I+ D T +SKG+ FV+F + AI MNGQ L R+I
Sbjct: 60 IERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNI 115
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 44.4 bits (100), Expect = 4e-05
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLL 427
L++AFA FG++ + R++ D + +SKG+ FV++ DAE A MN + L
Sbjct: 50 LQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFL 100
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 43.6 bits (98), Expect = 7e-05
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTN 451
L+ F+ FG++ + +I+ D + +S+G+ FV+F + AI+ MNG+ L R I N
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 43.6 bits (98), Expect = 7e-05
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTN 451
L+ F+ FG++ + +I+ D + +S+G+ FV+F + AI+ MNG+ L R I N
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 43.6 bits (98), Expect = 7e-05
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTN 451
L+ F+ FG++ + +I+ D + +S+G+ FV+F + AI+ MNG+ L R I N
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 43.6 bits (98), Expect = 7e-05
Identities = 20/59 (33%), Positives = 36/59 (61%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTN 451
L F+ +GEI + ++RD T KSKG+AF+++ + A+ +NG L+ R+I+ +
Sbjct: 52 LLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVD 110
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 43.6 bits (98), Expect = 7e-05
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+++ L + F G + ++ D +T +S+G+ FV+ ++ EAA Q NG L R
Sbjct: 102 VDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRP 161
Query: 440 IRTNWSTRKPPAK 478
+R N PP K
Sbjct: 162 LRVN--AGPPPPK 172
Score = 43.6 bits (98), Expect = 7e-05
Identities = 19/73 (26%), Positives = 41/73 (56%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
++ L F+ G++ R++ D + +SKG+ FV++ + + AI++++G L R
Sbjct: 215 VDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQ 274
Query: 440 IRTNWSTRKPPAK 478
IR + + +PP +
Sbjct: 275 IRVSEAEARPPRR 287
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 43.6 bits (98), Expect = 7e-05
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L+ AF +GEI C +V D T + KGY FV F + A A++ ++ +R + N
Sbjct: 424 LKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMY-NRIVVCNL 482
Query: 455 STRKPPAKG 481
++ KP G
Sbjct: 483 ASEKPGKAG 491
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 43.6 bits (98), Expect = 7e-05
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
LR+ F FG + + +V D + + KG+AF+ + + +A AIQ M+G+ L R I
Sbjct: 93 LRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVI 148
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 43.6 bits (98), Expect = 7e-05
Identities = 21/72 (29%), Positives = 42/72 (58%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L F +G+I+ C+I+ T + +G+ F++F + A+ AI+ M+G+ LG++ I N
Sbjct: 28 LESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNK 87
Query: 455 STRKPPAKGVNE 490
+ K + V++
Sbjct: 88 AEPKVGGEDVDQ 99
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 43.6 bits (98), Expect = 7e-05
Identities = 21/72 (29%), Positives = 42/72 (58%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L F +G+I+ C+I+ T + +G+ F++F + A+ AI+ M+G+ LG++ I N
Sbjct: 28 LESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNK 87
Query: 455 STRKPPAKGVNE 490
+ K + V++
Sbjct: 88 AEPKVGGEDVDQ 99
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/70 (27%), Positives = 44/70 (62%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
+I+++ L++ + FG++ +C +++D T +S+G+ +V+F DA+ A++ + LG+R
Sbjct: 13 DIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEH--FLGNR 70
Query: 437 SIRTNWSTRK 466
+ +T K
Sbjct: 71 ILEVKVATPK 80
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAE 394
E + LR+ F FG I + I +DP +G+ FV+F + A+
Sbjct: 250 EASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVAD 295
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
++ L F G++ R++ D + +SKG+ FV+ + + AI ++NG L R
Sbjct: 260 VDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQ 319
Query: 440 IRTNWSTRKPP 472
IR + + +PP
Sbjct: 320 IRVSEAEARPP 330
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+++ L + F G + ++ D +T +S+G+ FV+ A+ EAA Q NG R
Sbjct: 110 VDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRP 169
Query: 440 IRTNWSTRKPPAK 478
+R N PP K
Sbjct: 170 LRVN--AGPPPPK 180
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
++ L F G++ R++ D + +SKG+ FV+ + + AI ++NG L R
Sbjct: 268 VDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQ 327
Query: 440 IRTNWSTRKPP 472
IR + + +PP
Sbjct: 328 IRVSEAEARPP 338
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+++ L + F G + ++ D +T +S+G+ FV+ A+ EAA Q NG R
Sbjct: 110 VDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRP 169
Query: 440 IRTNWSTRKPPAK 478
+R N PP K
Sbjct: 170 LRVN--AGPPPPK 180
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E + + +R F FGEI ++ D T +SKGY FV+F + A A Q MN + G R
Sbjct: 32 ETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRR 91
Query: 437 S 439
+
Sbjct: 92 A 92
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E E L F PFG++ + ++ D T SK + F+S+ +A A+ AI MNG L +
Sbjct: 349 EFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGK 408
Query: 437 SIR 445
++
Sbjct: 409 KLK 411
Score = 34.7 bits (76), Expect = 0.034
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +2
Query: 263 ETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQ 421
ET + + F+ +G I + +I+R L SKG F+ + K A AA++A+NG+
Sbjct: 122 ETEV-QSLFSEYGTIKDLQILRGSLQT-SKGCLFLKYESKEQAVAAMEALNGR 172
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E E L F PFG++ + ++ D T SK + F+S+ +A A+ AI MNG L +
Sbjct: 340 EFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGK 399
Query: 437 SIR 445
++
Sbjct: 400 KLK 402
Score = 34.7 bits (76), Expect = 0.034
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +2
Query: 263 ETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQ 421
ET + + F+ +G I + +I+R L SKG F+ + K A AA++A+NG+
Sbjct: 113 ETEV-QSLFSEYGTIKDLQILRGSLQT-SKGCLFLKYESKEQAVAAMEALNGR 163
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 42.7 bits (96), Expect = 1e-04
Identities = 17/52 (32%), Positives = 34/52 (65%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
F+ FG+++ +++D T +S+G AFV +V + DA A ++M+ ++L R +
Sbjct: 77 FSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKL 128
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 257 EIETNILREAFAP-FGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS 433
E+ +L + F +G + ++V D T +SKGY FV F + + A+ MNGQ +
Sbjct: 164 EVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCST 223
Query: 434 RSIRTNWSTRK 466
R +R + K
Sbjct: 224 RPMRIGPAANK 234
Score = 41.1 bits (92), Expect = 4e-04
Identities = 24/65 (36%), Positives = 33/65 (50%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L+ F FGE+ + +I K FV + KA AE A+ +NG LG +SIR +W
Sbjct: 276 LKSIFGQFGELLHVKIP------PGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSW 329
Query: 455 STRKP 469
R P
Sbjct: 330 G-RSP 333
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQL-LGSRSIRTN 451
LR+ F FG + ++ DP T + KG+ F+ FV+ ++AA A+NG+L + R+I+ +
Sbjct: 281 LRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVS 340
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
++ L E F+ FG I++C+++ + SKG FV F +A A+ MNG+++G++
Sbjct: 234 VDNTKLEELFSEFGTITSCKVMVHSNGI-SKGVGFVEFSTSEEASKAMLKMNGKMVGNKP 292
Query: 440 I 442
I
Sbjct: 293 I 293
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
I+ L + F+ FG++ +C++ RD + SKGY FV F A NG L+ ++
Sbjct: 42 IDNKQLCDMFSAFGKVLSCKVARDASGV-SKGYGFVQFYSDLSVYTACNFHNGTLIRNQH 100
Query: 440 I 442
I
Sbjct: 101 I 101
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
L FA G++++C +V +P T S+G+AFV+ DAE I+ +N +L R
Sbjct: 88 LEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
L FA G++++C +V +P T S+G+AFV+ DAE I+ +N +L R
Sbjct: 87 LEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/64 (35%), Positives = 37/64 (57%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LR+ GEI R+++D + SKGYAFV+F K A+ AI+ ++ + ++IR +
Sbjct: 132 LRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSL 191
Query: 455 STRK 466
S K
Sbjct: 192 SETK 195
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS-- 433
++ N L FA GE+ + +++R+ T + +GY F+ F A AE +Q N + S
Sbjct: 73 MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFP 132
Query: 434 -RSIRTNWST 460
+ R NW++
Sbjct: 133 DQLFRLNWAS 142
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 257 EIETNILREAF-APFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS 433
++ IL E F A + + ++V D +T ++KGY FV F +++ A+ MNG +
Sbjct: 165 DVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCST 224
Query: 434 RSIRTNWSTRKPPAKG 481
R +R + K G
Sbjct: 225 RPMRIGPAASKKGVTG 240
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L+ F+ +GEI + +I K FV F +K+ AE A++ +NG LG ++R +W
Sbjct: 277 LKNVFSQYGEIVHVKIPA------GKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSW 330
Query: 455 STRKPPAK 478
R P K
Sbjct: 331 G-RSPSNK 337
Score = 27.1 bits (57), Expect = 6.9
Identities = 20/99 (20%), Positives = 40/99 (40%)
Frame = +3
Query: 12 LCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNWATS 191
L +F Q G++ KI P F++F+ +N + ++++W S
Sbjct: 277 LKNVFSQYGEIVHVKI---PAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRS 333
Query: 192 PGNQPKTDTSNHHHIFVGDLYQKSKQTYSERPSLHLVRY 308
P N+ D S ++ G ++ T + P+ + Y
Sbjct: 334 PSNKQSGDPSQFYYGGYGQGQEQYGYTMPQDPNAYYGGY 372
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS-- 433
++ N L FA GE+ + +++R+ T + +GY F+ F A AE +Q N + S
Sbjct: 73 MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFP 132
Query: 434 -RSIRTNWST 460
+ R NW++
Sbjct: 133 DQLFRLNWAS 142
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 257 EIETNILREAF-APFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS 433
++ IL E F A + + ++V D +T ++KGY FV F +++ A+ MNG +
Sbjct: 165 DVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCST 224
Query: 434 RSIRTNWSTRKPPAKG 481
R +R + K G
Sbjct: 225 RPMRIGPAASKKGVTG 240
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L + F PFG + + + R+P T +S+G +V+ A+ AI +++G +G R +R +
Sbjct: 124 LLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRY 183
Query: 455 STRKPP 472
S P
Sbjct: 184 SVDMNP 189
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.5 bits (93), Expect = 3e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIR 445
L AF FG + + ++ D T SK + FVS+ +A A+ AI MNG+ LG + ++
Sbjct: 365 LAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLK 421
Score = 30.7 bits (66), Expect = 0.56
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQ 421
++ F+ +G I + +I+R SKG AF+ + K A +A++++NG+
Sbjct: 122 VQSLFSKYGTIKDLQILRGAQQT-SKGCAFLKYETKEQAVSAMESINGK 169
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMN 415
+ + +LR F+ I + R+VRD T S+G+AFV F DA A++A N
Sbjct: 468 DADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATN 520
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAM--NGQLLGSRSIRT 448
L + A +G + + R++R+ + S+G+AF+ F A + + +G +L R +
Sbjct: 314 LYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEHDGIVLDGRKLMF 373
Query: 449 NWS 457
++S
Sbjct: 374 HYS 376
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 41.5 bits (93), Expect = 3e-04
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
L++ F GE++ RI+++P T KSKG AF+ F A+ A++ + ++ +
Sbjct: 230 LKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGK 283
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 41.5 bits (93), Expect = 3e-04
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LR++F FG + + + RD T +G+ FV F+ ADA A M+G LL R + +
Sbjct: 52 LRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVF 111
Query: 455 S--TRKPPAK 478
+ RK P +
Sbjct: 112 AEENRKKPTE 121
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +2
Query: 257 EIETNILREAFAP-FGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS 433
++ N+L E F+ + + ++V D T +SKGY FV F + + A+ MNG S
Sbjct: 207 DVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSS 266
Query: 434 RSIRTNWST 460
R++R +T
Sbjct: 267 RAMRIGPAT 275
Score = 30.3 bits (65), Expect = 0.74
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 302 EISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS--RSIRTNWST 460
EI + +++R+ S+GY FV F A+ ++ NG + + + R NW++
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWAS 182
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/64 (29%), Positives = 36/64 (56%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L + FA G++++ +V DP T +S+G+ F+S DA I++++ +L R I
Sbjct: 91 LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150
Query: 455 STRK 466
+ R+
Sbjct: 151 ARRR 154
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 41.1 bits (92), Expect = 4e-04
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E T+ +R F FGEI I+ D T KSKGY FV+F + A A+ N + G +
Sbjct: 27 ETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
Query: 437 S 439
+
Sbjct: 87 A 87
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 41.1 bits (92), Expect = 4e-04
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E T+ +R F FGEI I+ D T KSKGY FV+F + A A+ N + G +
Sbjct: 27 ETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
Query: 437 S 439
+
Sbjct: 87 A 87
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 40.7 bits (91), Expect = 5e-04
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
LRE F FG + + I RD + + +G+AFV FV DA A ++MN + R I
Sbjct: 63 LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREI 118
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 40.7 bits (91), Expect = 5e-04
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LR F FG + + + RD T +G+ F+ F+ ADA A M+G LL R + +
Sbjct: 53 LRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVF 112
Query: 455 S--TRKPPAK 478
+ RK P +
Sbjct: 113 AEENRKKPTE 122
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 40.7 bits (91), Expect = 5e-04
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 275 LREAF--APFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRT 448
LRE F A F +S + DP +S GY FVSF + +AE AI +NG+ + R I
Sbjct: 210 LRELFTAADFNPVSARVVFADPEG-RSSGYGFVSFATREEAENAITKLNGKEIMGRPITL 268
Query: 449 NWSTR 463
+S R
Sbjct: 269 KFSLR 273
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+ N + E F G ++N I+R K++G+AFV+ +A+AAI + + R
Sbjct: 106 MSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRI 164
Query: 440 IRTNWSTR--KPPAKGVNE 490
I +++ R KP K N+
Sbjct: 165 ISVSFARRFKKPTPKSPND 183
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 40.7 bits (91), Expect = 5e-04
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
E T+ +R F FGEI I+ D T KSKGY FV+F A A+ N + G +
Sbjct: 27 ETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRK 86
Query: 437 S 439
+
Sbjct: 87 A 87
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 40.3 bits (90), Expect = 7e-04
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
I ++ L F PFG I +C++V + +SKG+ FV F + A +A A++G ++ +
Sbjct: 123 ITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKK 180
Query: 440 I 442
+
Sbjct: 181 L 181
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/69 (26%), Positives = 41/69 (59%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+ + L F+ +G +S+ ++RD + +S+G+ FV+F +A+ A++++ G LGS+
Sbjct: 213 VTDDCLHTLFSQYGTVSSVVVMRDGMG-RSRGFGFVNFCNPENAKKAMESLCGLQLGSKK 271
Query: 440 IRTNWSTRK 466
+ + +K
Sbjct: 272 LFVGKALKK 280
Score = 33.1 bits (72), Expect = 0.10
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LRE F +G+I + +++ +SKG+ FV F +++ A + +NG L+ + I
Sbjct: 320 LREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRV 378
Query: 455 STRK 466
+ RK
Sbjct: 379 AERK 382
Score = 30.7 bits (66), Expect = 0.56
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 305 ISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNWSTR 463
+ + + R+ +T KS YA+++F A A+ +N L +++R WS R
Sbjct: 47 VVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQR 99
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 40.3 bits (90), Expect = 7e-04
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQ 406
+ + + L +AF +GEI +C+ V D ++ +SKGY F+ F ++ A A++
Sbjct: 138 DTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQ 406
+I+ L E F+ FGEI + D T + KG+A + A+ A++
Sbjct: 237 DIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 40.3 bits (90), Expect = 7e-04
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQ 406
L+ AF +GEI+ C +V D T ++KG+ FV F + A AA++
Sbjct: 179 LKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALK 222
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 40.3 bits (90), Expect = 7e-04
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
L + FA G++++ +V DP T +S+G+ F+S DA I++++ +L R I
Sbjct: 61 LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVI 116
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNWSTRK 466
F +GEI C +V D T K+KG+ FV F + A+ A++ ++L +R+ ++
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRIL-NRTATCQLASMG 182
Query: 467 PPAKG 481
P A G
Sbjct: 183 PAASG 187
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNWSTRK 466
F +GEI C +V D T K+KG+ FV F + A+ A++ ++L +R+ ++
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRIL-NRTATCQLASMG 182
Query: 467 PPAKG 481
P A G
Sbjct: 183 PAASG 187
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L+E F FGE+ + I D +G+ +V F +ADAE A M+G + + ++ +
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173
Query: 455 STRKPPAKGVN 487
+ PP + V+
Sbjct: 174 TL--PPRQKVS 182
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L+E F FGE+ + I D +G+ +V F +ADAE A M+G + + ++ +
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173
Query: 455 STRKPPAKGVN 487
+ PP + V+
Sbjct: 174 TL--PPRQKVS 182
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LRE + +G I N R+VR +T S+GY FV + + + A + + L+ R I ++
Sbjct: 80 LREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIVDY 139
Query: 455 STRK 466
+ ++
Sbjct: 140 NRQQ 143
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LR+ F+PFG+I + R+ + + + GYAFV FV K +A A +A+ R + W
Sbjct: 685 LRQLFSPFGQIKSMRLPKKNIG-QYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVLEW 743
Query: 455 S 457
+
Sbjct: 744 A 744
Score = 32.3 bits (70), Expect = 0.18
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
L E F+ FG+IS +V D T +S+G A++ ++ A A++ ++ R
Sbjct: 277 LMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGR 330
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/64 (25%), Positives = 37/64 (57%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L++AF + +++ + T +S+G+ F+SF + ++A+ MNG + R++R N
Sbjct: 235 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 294
Query: 455 STRK 466
++ +
Sbjct: 295 ASER 298
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQ 406
+ + N+LRE F+ FGE+ ++R+ T + +G+ FV+F A + +Q
Sbjct: 16 DTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +2
Query: 263 ETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
+ +L+EAF FG+I + +V D + S+G+ FV++ A A+QAM + L R I
Sbjct: 48 DVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRII 107
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNG 418
L+ F+ FG++ + +I+ D + +S+G+ FV+F + AI+ MNG
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQA 409
E ++ LR+ F +GEI ++ D T +SKGY FV+F D EAA +A
Sbjct: 34 ETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTF---RDPEAARRA 81
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIV---RDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLL 427
+++ N L F FG I++ +I+ D + + FVSF+ +AD +AA M G ++
Sbjct: 189 KVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQAAKDEMQGIIV 248
Query: 428 GSRSIRTNW 454
++ W
Sbjct: 249 YEYELKIGW 257
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTN 451
F+ FG + R+ R+ T KSK + F+ F AE A AMN LL ++ +
Sbjct: 80 FSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVH 134
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
+RE FG + +V+D T SKGYAF + + + A A+NG +G +++
Sbjct: 391 IRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTL 446
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +2
Query: 263 ETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
E L F+ FG + + ++RD T S YAF+ F K E A M+ L+ R I
Sbjct: 255 EDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRI 314
Query: 443 RTNWS 457
++S
Sbjct: 315 HVDFS 319
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQ 406
E + + LRE F +GE+S ++RD LT + +G+ FV F + + +Q
Sbjct: 16 ETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +2
Query: 266 TNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLG 430
T LR F+ +G++ ++ D +T KSKGY FV+F+ A A++ + ++ G
Sbjct: 88 TEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +2
Query: 266 TNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLG 430
T LR F+ +G++ ++ D +T KSKGY FV+F+ A A++ + ++ G
Sbjct: 88 TEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 37.1 bits (82), Expect = 0.006
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI---R 445
+RE FG + +V+D T SKGYAF + + + A A+NG +G +++ R
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 434
Query: 446 TNWST--RKPPAKGV 484
N T +KP + V
Sbjct: 435 ANQGTMLQKPEQENV 449
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 37.1 bits (82), Expect = 0.006
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI---R 445
+RE FG + +V+D T SKGYAF + + + A A+NG +G +++ R
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 434
Query: 446 TNWST--RKPPAKGV 484
N T +KP + V
Sbjct: 435 ANQGTMLQKPEQENV 449
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 37.1 bits (82), Expect = 0.006
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI---R 445
+RE FG + +V+D T SKGYAF + + + A A+NG +G +++ R
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 434
Query: 446 TNWST--RKPPAKGV 484
N T +KP + V
Sbjct: 435 ANQGTMLQKPEQENV 449
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 37.1 bits (82), Expect = 0.006
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 299 GEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIR 445
G + N +V DP+T KG AFV+F K A+ A++G + SR I+
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAV-ALSGTMFYSRPIK 516
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 36.3 bits (80), Expect = 0.011
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIV---RDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLL 427
+++ N L F FG I++ +I+ + + + FV+F+ +AD EAA + M G ++
Sbjct: 197 KVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADGEAAKEKMQGIIV 256
Query: 428 GSRSIRTNW 454
++ W
Sbjct: 257 YEYELKIGW 265
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 36.3 bits (80), Expect = 0.011
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQA 409
F +G+I I+ D LT +SKGY FV+F DA+AA +A
Sbjct: 37 FIKYGDILEAVIISDKLTRRSKGYGFVTF---KDAKAATRA 74
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 36.3 bits (80), Expect = 0.011
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIR 445
L F FGE+ IV DP T + G A++ F +K AE A+ +++G SR ++
Sbjct: 532 LSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL-SLDGTSFMSRILK 587
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 35.9 bits (79), Expect = 0.015
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQA 409
E ++ LR F +G+I ++ D T +SKGY FV+F D EAA +A
Sbjct: 34 ETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF---RDPEAARRA 81
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 35.1 bits (77), Expect = 0.026
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2
Query: 299 GEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNWSTRK 466
GE++ RI+R+ + KGYAFV+F K A AI +N + I+ + + K
Sbjct: 116 GEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAK 171
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 35.1 bits (77), Expect = 0.026
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNG 418
+ E F+ +G I + + D + + +GYAFV F K A AAI+A+NG
Sbjct: 223 VNEVFSRYGIIEDIYMALDDMKI-CRGYAFVQFSCKEMALAAIKALNG 269
Score = 33.1 bits (72), Expect = 0.10
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQ 421
+R+ F +G ++ + +D +T + Y F+ + K + AAI A+ Q
Sbjct: 126 IRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAALTEQ 174
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 34.7 bits (76), Expect = 0.034
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +2
Query: 266 TNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIR 445
T L + F P+G+I N RI R+ +AF+ + + DA A+ A N L + I
Sbjct: 70 TRDLEKHFEPYGKIVNVRIRRN--------FAFIQYEAQEDATRALDASNNSKLMDKVIS 121
Query: 446 TNWSTRKPPAKG 481
++ + A+G
Sbjct: 122 VEYAVKDDDARG 133
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 34.7 bits (76), Expect = 0.034
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +2
Query: 266 TNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIR 445
T L + F P+G+I N RI R+ +AF+ + + DA A+ A N L + I
Sbjct: 111 TRDLEKHFEPYGKIVNVRIRRN--------FAFIQYEAQEDATRALDASNNSKLMDKVIS 162
Query: 446 TNWSTRKPPAKG 481
++ + A+G
Sbjct: 163 VEYAVKDDDARG 174
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 34.7 bits (76), Expect = 0.034
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQA 409
E +++ F FGEI ++ D + +SKGY FV+F +AEAA A
Sbjct: 23 ETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF---REAEAARSA 70
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 34.7 bits (76), Expect = 0.034
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQA 409
E +++ F FGEI ++ D + +SKGY FV+F +AEAA A
Sbjct: 23 ETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF---REAEAARSA 70
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 34.7 bits (76), Expect = 0.034
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQA 409
E +++ F FGEI ++ D + +SKGY FV+F +AEAA A
Sbjct: 23 ETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF---REAEAARSA 70
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 34.3 bits (75), Expect = 0.045
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNG 418
+ E F FG + + ++RD +S+G FV + K A AAI +NG
Sbjct: 227 VEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 34.3 bits (75), Expect = 0.045
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNG 418
+ E F FG + + ++RD +S+G FV + K A AAI +NG
Sbjct: 227 VEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNG 273
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 34.3 bits (75), Expect = 0.045
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 257 EIETNILREAF-APFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGS 433
E L+E F A G + + ++ +S GY FVSF K AEAA+ G+
Sbjct: 199 EARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLG 258
Query: 434 RSIR 445
R IR
Sbjct: 259 RPIR 262
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 34.3 bits (75), Expect = 0.045
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQA 409
LR F FG+I ++ D + +SKGY FV+F D EAA +A
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF---CDPEAAQKA 64
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 34.3 bits (75), Expect = 0.045
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQA 409
LR F FG+I ++ D + +SKGY FV+F D EAA +A
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF---CDPEAAQKA 64
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 33.9 bits (74), Expect = 0.060
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLG 430
F FGEI ++V D T +SKG+ FV+F + A A + N + G
Sbjct: 29 FERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDG 76
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 33.5 bits (73), Expect = 0.079
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQA 409
F FGEI + +V D T +S+GY FV+F DAE+A +A
Sbjct: 33 FKRFGEIIHVNVVCDRETDRSQGYGFVTF---KDAESATRA 70
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 33.1 bits (72), Expect = 0.10
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSF 373
++ + +E F FGE+ +I+RD T +S+G+ FV++
Sbjct: 141 VDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTY 178
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 32.7 bits (71), Expect = 0.14
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
++ +L F+ FG++ + +D +S+G+AF+ F A A+ M+G+L+G +
Sbjct: 27 QVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRAMLHMDGRLIGQK 85
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 350 KGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNWSTRKPPAKGVNEG 493
KGY + F +A+ A++ MNG+LL R +R + + + + N G
Sbjct: 424 KGYGHIEFASPEEAQKALE-MNGKLLLGRDVRLDLANERGTPRNSNPG 470
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LR F+ GE++ + D T S+G+A++ D A+Q ++G +G +I
Sbjct: 499 LRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD--EALQ-LSGSEIGGGNIHVEE 555
Query: 455 STRKPPAKG 481
S + +G
Sbjct: 556 SRPRDSDEG 564
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 32.3 bits (70), Expect = 0.18
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLG 430
F FG++ +CRI DP ++ +AF+ F + A A+ ++G +LG
Sbjct: 170 FIGFGQVVDCRICGDPNSVLR--FAFIEFTDEVGARTALN-LSGTMLG 214
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 32.3 bits (70), Expect = 0.18
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQ 406
LR F FG++ + +V + +SKGY F++F A+Q
Sbjct: 28 LRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQ 71
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 32.3 bits (70), Expect = 0.18
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +2
Query: 269 NILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLG 430
N LRE F+ GEI N + D T SKG A++ F E A++ +NG +G
Sbjct: 419 NTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF--SEGKEKALE-LNGSDMG 469
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 31.9 bits (69), Expect = 0.24
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 287 FAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
F GE+ + R++ P + K GY FV F A A++ NG+ L I
Sbjct: 702 FNDVGEVVSVRLIVSPES-KHVGYGFVEFASPCLANMALEKKNGEYLHDHKI 752
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 31.9 bits (69), Expect = 0.24
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 281 EAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQ-LLG 430
E F+ G++ + RI+ D ++ +S+G +V F AI A++GQ LLG
Sbjct: 200 EFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLG 249
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 31.9 bits (69), Expect = 0.24
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
LRE G + + R+V D T K KGY F + + A +A + + + R +R ++
Sbjct: 25 LREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQSYEINGRQLRVDF 84
Query: 455 S 457
+
Sbjct: 85 A 85
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 31.9 bits (69), Expect = 0.24
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+ + +G + + + ++ KSKGY V F A A A + MNG + ++
Sbjct: 218 IESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNGFIFNGKA 272
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 31.5 bits (68), Expect = 0.32
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSF 373
L++ FA +G + +++RD T +S+G+ FV F
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Score = 30.3 bits (65), Expect = 0.74
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +2
Query: 272 ILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQ 406
+ + F +GEI++ I+RD T + +G+ F++F + + I+
Sbjct: 34 VFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 31.5 bits (68), Expect = 0.32
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSF 373
L++ FA +G + +++RD T +S+G+ FV F
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Score = 30.3 bits (65), Expect = 0.74
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +2
Query: 272 ILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQ 406
+ + F +GEI++ I+RD T + +G+ F++F + + I+
Sbjct: 34 VFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 30.7 bits (66), Expect = 0.56
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQ 421
++ F+ +G I + +I+R SKG AF+ + K A +A++++NG+
Sbjct: 122 VQSLFSKYGTIKDLQILRGAQQT-SKGCAFLKYETKEQAVSAMESINGK 169
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 30.7 bits (66), Expect = 0.56
Identities = 14/64 (21%), Positives = 26/64 (40%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+E + + G + +C DP T K KG+ F F AI+ + + + +
Sbjct: 214 VENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQE 273
Query: 440 IRTN 451
+ N
Sbjct: 274 LLVN 277
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 30.3 bits (65), Expect = 0.74
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNW 454
L + F FGE+ + + P + YAFV+F DA AAI+++ G L +R +
Sbjct: 39 LADRFLRFGELES--LAFQP----GRSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEF 92
Query: 455 STRKPPAKG 481
+ + + G
Sbjct: 93 AKAEKSSTG 101
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 29.9 bits (64), Expect = 0.97
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+ + L + F +GEI R +R+ T + + F+ + DAE A++A+N +G +
Sbjct: 281 VSNDELLQLFGAYGEI---REIRE--TPNRRFHRFIEYYDVRDAETALKALNRSEIGGKC 335
Query: 440 IRTNWS 457
I+ S
Sbjct: 336 IKLELS 341
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 29.9 bits (64), Expect = 0.97
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSRS 439
+ + L + F +GEI R +R+ T + + F+ + DAE A++A+N +G +
Sbjct: 294 VSNDELLQLFGAYGEI---REIRE--TPNRRFHRFIEYYDVRDAETALKALNRSEIGGKC 348
Query: 440 IRTNWS 457
I+ S
Sbjct: 349 IKLELS 354
>At1g05400.1 68414.m00548 hypothetical protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 161
Score = 29.9 bits (64), Expect = 0.97
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 11 PMYVVWSNRRCKRLQDYTGARK*PVCISRVYVSHG 115
P+YV W +RC DY R P CI R+ G
Sbjct: 13 PVYVYWDMKRCPVPDDYDARRVGP-CIKRILRKSG 46
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 260 IETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSF 373
+E + L+ F +G+I +I+ D T +S+G+ FV+F
Sbjct: 168 LEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTF 205
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 113 GGGHSAGRH-EQASGPRQGNEG*LGDESW 196
GGGHS+GR + G R G G G++ W
Sbjct: 14 GGGHSSGRRGGRGGGGRGGGGGGRGEQRW 42
>At1g79100.1 68414.m09223 arginine/serine-rich protein-related
similar to arginine/serine-rich protein [Arabidopsis
thaliana] GI:6601502
Length = 70
Score = 28.7 bits (61), Expect = 2.2
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 296 FGEISNCRIVRDPLTLKSKGYAFVSF-VKKADAEAAIQAMNGQLLGSRSIRTNWSTRKPP 472
FGEI + ++ D S+G A+V F K ADAE M+G R IR + + R+ P
Sbjct: 11 FGEIIHVQLAIDRAANLSRGDAYVEFKAKIADAEKPQLYMDGGY--PRRIRGSPALRRSP 68
Query: 473 AK 478
+
Sbjct: 69 LR 70
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLGSR 436
L +G + + + + KSKGY V F A A A+NG R
Sbjct: 250 LEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGR 303
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 257 EIETNILREAF--APFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLG 430
E+E ++ E+ PF + C P +G V F + DA+ I+AMNG+
Sbjct: 428 ELEEDVKEESLKHGPFDSVKVCE--HHP-----QGVVLVRFKDRRDAQKCIEAMNGRWYA 480
Query: 431 SRSIRTN 451
R I +
Sbjct: 481 KRQIHAS 487
>At4g08690.1 68417.m01432 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650: CRAL/TRIO domain; similar to
polyphosphoinositide binding protein Ssh2p (GI:2739046)
[Glycine max]; similar to SEC14-like protein (GB:U82515)
[D. discoideum]
Length = 301
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 322 STRSINAQIQGLCFCIICKESRCRSCHPGNEWPVAGIKIHTYELVN 459
+++S+ QI+ L +C+ E+ ++ PG E V I H Y L N
Sbjct: 115 NSKSVKGQIRYLVYCM---ENAVQNLPPGEEQMVWMIDFHGYSLAN 157
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 329 DPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLLG--SRSIRTNWS 457
D + +KS GYAFV F + DAE AI+ ++ G R + W+
Sbjct: 29 DRVDMKS-GYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWA 72
>At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 752
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 138 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLYQKSKQ 269
MN+R+ L KE+ +W G + + HH ++Y+K K+
Sbjct: 616 MNERM-LKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKE 658
>At1g68640.1 68414.m07843 bZIP family transcription factor
(PERIANTHIA) identical to transcription factor
PERIANTHIA GB:AAD19660 GI:4378757 from [Arabidopsis
thaliana]
Length = 452
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -2
Query: 417 PFIAWMAASASAFFTNDTKA*PLDLSVNGSRTMRQFDISPNGAKASRSMFVSISDT 250
PF + +S FF D+ VNG D+SPN AS ++ + DT
Sbjct: 9 PFTPDFYSQSSYFFRGDSCLEEFHQPVNGFHHEEAIDLSPNVTIASANLHYTTFDT 64
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 344 KSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSIRTNWSTRKPPAKGVN 487
K GY FV F + + A++ NG+ L I + + P G N
Sbjct: 282 KHVGYGFVEFASADETKKALENKNGEYLHDHKIFIDVAKTAPYPPGPN 329
>At3g24440.1 68416.m03067 fibronectin type III domain-containing
protein contains Pfam profile PF00041: Fibronectin type
III domain
Length = 602
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -3
Query: 125 CGRRRVTRKLEKCIRVISWLP---YNLATFYIAYLT 27
C + LEKC++VI WL + TF + +LT
Sbjct: 514 CDSSSIDDTLEKCVKVIRWLEREGHIKTTFRVRFLT 549
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 27.5 bits (58), Expect = 5.2
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +2
Query: 275 LREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNGQLL--GSRSIRT 448
L F+ FG + + +KS GYAFV F + DAE AI+ + G R +
Sbjct: 18 LERLFSKFGRVKR-------VDMKS-GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSV 69
Query: 449 NWS 457
W+
Sbjct: 70 EWA 72
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 27.5 bits (58), Expect = 5.2
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +3
Query: 204 PKTDTSNHHHIFVGDLYQKSKQTYSERPSLHLVRYRTVA*YAIH*RSNPRVMLLYHL*RK 383
P + T+ HHH F L Q + R + HL++ T + +N ++LL
Sbjct: 160 PPSYTTLHHHRFTTHLLQSYTTLHHHRFTTHLLQLYTTPHHHPRSTTNTNLLLLRTPLLT 219
Query: 384 QMPKLP 401
P LP
Sbjct: 220 STPTLP 225
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNG 418
+I + + F+ +G + + P + GYAFV F DAE AI +G
Sbjct: 17 DIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEFDDARDAEDAIHGRDG 67
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNG 418
+I + + F+ +G + + P + GYAFV F DAE AI +G
Sbjct: 17 DIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEFDDARDAEDAIHGRDG 67
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAMNG 418
+I + + F+ +G + + P + GYAFV F DAE AI +G
Sbjct: 17 DIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEFDDARDAEDAIHGRDG 67
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 353 GYAFVSFVKKADAEAAIQAMNGQLL--GSRSIRTNWS 457
GYAFV F + DAE AI+ + G R + W+
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWA 46
>At5g36780.1 68418.m04406 hypothetical protein
Length = 576
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAM 412
E+ N+L + E+S+ + L +S+GY V KK + + ++A+
Sbjct: 98 ELRINVLSAKKSELAEVSSLYTQMESLVPQSEGYRMVIEEKKKEFDTLLEAL 149
>At5g36690.1 68418.m04391 hypothetical protein
Length = 576
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 257 EIETNILREAFAPFGEISNCRIVRDPLTLKSKGYAFVSFVKKADAEAAIQAM 412
E+ N+L + E+S+ + L +S+GY V KK + + ++A+
Sbjct: 98 ELRINVLSAKKSELAEVSSLYTQMESLVPQSEGYRMVIEEKKKEFDTLLEAL 149
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 204 PKTDTSNHHHIFVGDLYQKSKQTYSERPSLHLVRYRTVA*YAIH*RSNPRVMLL 365
P + T+ HHH F L Q + R + HL++ T + +N ++LL
Sbjct: 160 PPSYTTLHHHRFTTHLLQSYTTLHHHRFTTHLLQLYTTPHHHPRSTTNTNLLLL 213
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 344 KSKGYAFVSFVKKADAEAAIQAMNGQLLGSRSI 442
K GY FV F A A++ NG+ L + I
Sbjct: 196 KHVGYGFVEFASAYGANKALEEKNGEYLHNHKI 228
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,698,154
Number of Sequences: 28952
Number of extensions: 242691
Number of successful extensions: 919
Number of sequences better than 10.0: 180
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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