Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30689
         (785 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    26   0.39 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   4.8  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   8.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.4  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 676 QPLFPLGPGLTWRGSKPLGNPLLRAVVSGPPDGCSP 783
           +PL P   G+   G+ PL +P L A+   PP    P
Sbjct: 186 RPLLPPSFGIFPGGAPPLVSPFLAAMAHRPPHFAFP 221


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 160 LPSGQLLEI--RSERASESSDCGNG 228
           LP  +LL+   +S R   SS CGNG
Sbjct: 26  LPEEKLLDALCQSFRKQNSSSCGNG 50


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 761 PETTARSKGFPKGLLPLQVKPG 696
           P   A S+  P  LLPL  +PG
Sbjct: 328 PSDGATSEALPFELLPLDSEPG 349


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 775 NRPAVRKRPPEAKDFPRV 722
           N+P V  +PP+A  F  V
Sbjct: 187 NKPVVVTKPPQAPPFATV 204


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 614 CQPVIVLPSFKSPPTIRQPLGNRYSPLALV*LGGEANPWEIL 739
           C P+I L     P   +  L N Y  L +  +  E N W  L
Sbjct: 494 CDPLITLIETWMPLLPQWILDNIYDQLIMPRIQAEVNIWNPL 535


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,663
Number of Sequences: 336
Number of extensions: 4602
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)