Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30689
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 30 0.33
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 27 2.3
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 27 2.3
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 2.3
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 3.0
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 4.0
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 26 7.0
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 9.3
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 9.3
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 9.3
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 30.3 bits (65), Expect = 0.33
Identities = 7/43 (16%), Positives = 25/43 (58%)
Frame = +1
Query: 499 EECIRHAVATVFKNDNCSVFHSKRKQCYRGREVYSKHSVSTSH 627
++C++H + ++K+++ HS+ ++ + ++++ H H
Sbjct: 90 DQCLKHNIPCIYKSNSTKRSHSRHEEIHHQQQLHLNHQYQHQH 132
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 191 PSVPQNLQIVEMDSNILDLKETFVMKARRSRLGLFCAGIKP 313
PS+P + IV +N +DL E + SRLGL +P
Sbjct: 474 PSLPHSRLIVVAVANTMDLPERILSNRISSRLGLSRVPFEP 514
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 86 IALRERKRDKPILELSKHSKKFDISS-LQDNYLKYDPSVPQNLQIVE 223
I R +KRD+ IL ++ KF+ SS ++N + D P+ +Q +E
Sbjct: 240 IMKRGKKRDRSILWEELNNGKFEFSSRSEENSVLLDDFTPETVQPLE 286
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 233 YCPFPQSEDSEARSDRISSSCPEGS*CRIFWS 138
Y F ED E D ++ + +G CRI WS
Sbjct: 125 YVNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 605 NTACQPVIVLPSFKSPPTIRQPLG 676
NT P + LPS S PTI+ P G
Sbjct: 415 NTLQIPAVRLPSLPSSPTIKNPSG 438
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 529 VFKNDNCSVFHSKRKQCYRGREVYSK 606
+FKND S F SKRK+ + + Y +
Sbjct: 28 IFKNDKPSKFKSKRKEKDKNSDAYDE 53
>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 520 VATVFKNDNCSVFHSKRKQCYRGREVYSKHSVSTSHCASVVQKPANNPPAPWQP 681
VA +F+ + S+ +S+ + +R S S S V NPP+ +QP
Sbjct: 162 VAKIFRGRDVSLLYSQLRLMFRKVSCAKPRSSRASSIESFVVCEDFNPPSNFQP 215
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 104 KRDKPILELS-KHSKKFDISSLQDNYLKYDPSVPQNLQIVEMDSN 235
K K LE K+S + ++ +NY Y S+P N Q+ + DSN
Sbjct: 106 KSSKDTLEKQPKYSSQIYLTDSFENY--YLASLPTNYQLYQRDSN 148
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 128 LSKHSKKFDISSLQDNYLKYDP----SVPQNLQIVEMDSNIL 241
L K +F + +L NY Y P +VP+N Q++ + +++
Sbjct: 176 LFKRDGQFVLQALDHNYAVYGPETVLNVPENAQLLVTEKDVI 217
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 110 DKPILELSKHSKKFDISSLQDNYLKY----DPSVPQNLQIVEMDSNILDLKETFVMK 268
D PI++ +K +SSL+D +L D SV I + ++N+ L++ + K
Sbjct: 414 DVPIMKTTKAKVLKSLSSLKDEFLPIEILNDESVIAETSIEKEETNVTHLEKPVISK 470
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,502,277
Number of Sequences: 5004
Number of extensions: 76287
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -