Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30689
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0019 + 167900-168343,168567-168751,169076-169430 32 0.45
01_01_0650 - 4948852-4950012 31 0.79
01_01_0027 - 205450-206029,206706-207276,207408-207836,208438-20... 31 1.4
03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849... 30 2.4
04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713 29 3.2
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744... 29 3.2
10_01_0136 - 1639780-1639901,1640038-1640093,1641958-1642061,164... 29 5.5
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 28 7.3
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241... 28 7.3
03_05_1137 + 30652967-30653183,30653281-30653485,30653696-306537... 28 7.3
06_03_1285 - 28993305-28993442,28993559-28993798,28993881-289939... 28 9.7
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 28 9.7
05_02_0028 - 5764980-5766374 28 9.7
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 28 9.7
03_02_0564 - 9477118-9477200,9477617-9477687,9477799-9477944,947... 28 9.7
01_01_1195 - 9567023-9567789,9567871-9568120 28 9.7
>03_01_0019 + 167900-168343,168567-168751,169076-169430
Length = 327
Score = 32.3 bits (70), Expect = 0.45
Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Frame = +1
Query: 496 WEECIRHAVATVFKNDNCSVFHSKRKQCYRGREVYSKHSVSTSHCASVVQKPANNPPAPW 675
W + A+ + CS H K K G + S S S S+ A P AP
Sbjct: 11 WSVGVAAALLCLLAAHGCSAKHHKPKPTPGGISGNASSSSSNSSTPSIPPPVAPTPTAPT 70
Query: 676 QPLFPLGPGLTWRGSKPLGNPLL--RAVVSGPPDGCSP 783
P+ G G + S G L RA G P+G P
Sbjct: 71 PPIPSPGTGSSNGSSGGGGGGWLNARATWYGAPNGAGP 108
>01_01_0650 - 4948852-4950012
Length = 386
Score = 31.5 bits (68), Expect = 0.79
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 592 EVYSKHSVSTSHCASVVQKPANNPPAPWQPLFPLGPGLTWRGSKP-LGNPL 741
E Y ++ +S S + P +PP+ PL P G RGS P +G+P+
Sbjct: 210 ESYLTKTIMSSSPTSTLMSPPKSPPSESPPLSPDGAAAIRRGSWPGVGSPV 260
>01_01_0027 -
205450-206029,206706-207276,207408-207836,208438-208525
Length = 555
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 636 RRSKARQQSASPLATVIPP-WPWFNLEGKQTLGKSFASGGR 755
RR ++R+ S++ ++PP W F E +++ K+F+ G R
Sbjct: 215 RRRRSREGSSTSATALVPPLWKVFTSEELRSITKNFSEGNR 255
>03_05_1138 +
30684014-30684386,30684480-30684865,30684870-30684962,
30684963-30685108,30685211-30685454,30685562-30685666,
30685774-30685956,30686052-30686738
Length = 738
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +1
Query: 634 SVVQKPANNPPAPWQPLFPLGPGLT 708
SV Q P N A + PLFPLG GLT
Sbjct: 708 SVDQLPMNYGDAHYDPLFPLGFGLT 732
>04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713
Length = 236
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 59 HIATPIPLHIALRERKRDKPILELSKHSKKFDISSLQDNYLKYDPS 196
H+ I L AL +R P+L + + S+ +D + KYDP+
Sbjct: 130 HVKDIIHLRSALHRLRRQGPLLAVIRISRNYDECRKSGHVYKYDPA 175
>01_06_0866 - 32572002-32572541,32572806-32572984,32574330-32574430,
32574554-32574887,32574915-32575037,32575193-32575394,
32575915-32576097,32576332-32576436,32576553-32576760,
32577025-32577170,32577321-32577443,32577490-32577698,
32577931-32578152,32578189-32578198,32578710-32578763,
32580841-32581052,32581620-32581772,32582071-32582158,
32582192-32582290,32582660-32582907,32584806-32585049
Length = 1260
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 634 SVVQKPANNPPAPWQPLFPLGPGLTWRGSKP 726
SV Q P N + PLFP G GLT S+P
Sbjct: 957 SVDQLPMNVGDLHYDPLFPFGFGLTINSSQP 987
>10_01_0136 -
1639780-1639901,1640038-1640093,1641958-1642061,
1642119-1642301,1642963-1643073,1643175-1643330,
1644627-1644866,1646496-1646603,1646764-1647903
Length = 739
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 604 KHSVSTSHCASVVQKPANNPPAPWQPLFPLGPGLTWRGSK 723
+ S + H SV + + + P WQ F P L WRG K
Sbjct: 564 ERSFTCEHLMSVKVRCSEDDPMLWQKRFGRLPKLWWRGRK 603
>08_01_0519 -
4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 582 SRERSLFKTQRVNQSLCFRRSKARQQSASPLATVIPPWPWFNLEGKQTLG 731
+ + SLF+ NQ+ RRSK+ +++A+ +P P ++ +GK G
Sbjct: 161 AEDSSLFRPGAKNQAYARRRSKSSRENATASVGSLPVSPLYS-QGKDAKG 209
>05_05_0051 +
21923402-21923763,21923861-21923951,21924048-21924196,
21924279-21924522,21924664-21924768,21924842-21925024,
21925118-21925319,21925896-21926372,21926680-21926771,
21927265-21927444
Length = 694
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 634 SVVQKPANNPPAPWQPLFPLGPGL-TWRGSKPLGNPLLRAVVSGP 765
S Q P N A PLFP G GL +RG + N + +A++ GP
Sbjct: 577 STDQLPINARDASDDPLFPFGYGLKMFRGRSTINNRIGQAMI-GP 620
>03_05_1137 +
30652967-30653183,30653281-30653485,30653696-30653786,
30653904-30654046,30654186-30654429,30654536-30654640,
30654985-30655167,30655255-30655459,30655552-30656036
Length = 625
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +1
Query: 634 SVVQKPANNPPAPWQPLFPLGPGLT 708
SV Q P N A + PLFP G GLT
Sbjct: 595 SVDQLPMNVGDAHYDPLFPFGYGLT 619
>06_03_1285 -
28993305-28993442,28993559-28993798,28993881-28993961,
28994370-28994429,28994523-28994628,28994861-28994921,
28995198-28995246,28995475-28995599,28995809-28995947,
28996432-28996503,28996615-28996742,28997037-28997136,
28997757-28997897,28998116-28998232,28998505-28998609,
28999037-28999153
Length = 592
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 152 DISSLQDNYLKYDPSVPQNLQIVEMDSNILDLKETFVMKARRSRLGLFCAGI 307
D + ++ Y + PSVP + D N + L+E V +AR + L G+
Sbjct: 99 DSKAGKNPYDGFSPSVPSGEVLTFGDDNFVSLEEAGVKEARHAAFVLVAGGL 150
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = +1
Query: 637 VVQKPANNP--PAPWQPLFPLGPGLTWRGSKPLGNPLLRAVVSGPPDGCSP 783
V P P PAP P P PG + P GNP A PP +P
Sbjct: 57 VYPPPPTKPALPAPLPPT-PASPGDSPPSIAPAGNPPTPAQAGAPPPSIAP 106
>05_02_0028 - 5764980-5766374
Length = 464
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 592 EVYSKHSVSTSHCASVVQKPANNPPAPWQPLFPLGPGLTWRGS-KPLGNPL 741
E Y S+ +S S + P +PP+ PL P G RG+ +G+P+
Sbjct: 284 ESYLTKSIMSSSPTSTLVSPPRSPPSESPPLSPDAAGALRRGAWAGVGSPV 334
>04_04_1690 -
35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 545 LSFLNTVATACRMHSSQSSEAHTNSQLYSN 456
L L+T+AT C H ++ ++ NS Y+N
Sbjct: 43 LGLLHTLATICEAHEARYAQECANSPSYNN 72
>03_02_0564 -
9477118-9477200,9477617-9477687,9477799-9477944,
9478051-9478128,9478284-9478388,9478647-9478769,
9479085-9479171,9479272-9479352,9479443-9479512,
9479604-9479662,9479763-9479831,9479912-9479962,
9480063-9480107,9480203-9480276,9480544-9480667,
9480773-9480940
Length = 477
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 591 RSLFKTQRVNQSLCFRRSKARQQSASPLATVIPPWPWFNLEGKQTLGKSFASGG 752
RS F+T S + SA+P+ ++P PW +EG T K F + G
Sbjct: 20 RSSFRTSSPRPSRMVCAAAEGFISAAPI--LLPDGPWKQVEGGVTAAKGFKAAG 71
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 27.9 bits (59), Expect = 9.7
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +3
Query: 492 RLGRMHSTCGSNGVQERQLFCVPFKTQ-AMLSRERSLFKTQRVNQSLCFRRSKARQQSAS 668
RL H G+ +LF P +T A+ + L + QS FRR K SAS
Sbjct: 111 RLMAAHRAYGNKWALIARLF--PGRTDNAVKNHWHVLMARRHREQSGAFRRRKPSSSSAS 168
Query: 669 PLATVIPPWP 698
P PP P
Sbjct: 169 PAPAPAPPPP 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,304,967
Number of Sequences: 37544
Number of extensions: 551357
Number of successful extensions: 1698
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1697
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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