Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30689
(785 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6) 33 0.20
SB_41745| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_31489| Best HMM Match : Ion_trans (HMM E-Value=0.015) 32 0.61
SB_17341| Best HMM Match : RVT_1 (HMM E-Value=0.063) 32 0.61
SB_12540| Best HMM Match : Pep_M12B_propep (HMM E-Value=3.4e-07) 31 1.4
SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13) 30 1.8
SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3) 30 2.4
SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_54193| Best HMM Match : REF (HMM E-Value=8.4) 29 4.3
SB_42670| Best HMM Match : RVT_1 (HMM E-Value=5.6e-27) 29 4.3
SB_32784| Best HMM Match : RVT_1 (HMM E-Value=3.9e-26) 29 4.3
SB_30073| Best HMM Match : RVT_1 (HMM E-Value=3e-26) 29 4.3
SB_8667| Best HMM Match : SAP (HMM E-Value=2.3) 29 4.3
SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8) 29 4.3
SB_567| Best HMM Match : RVT_1 (HMM E-Value=8.3e-05) 29 4.3
SB_51268| Best HMM Match : SAP (HMM E-Value=2.3) 29 4.3
SB_41512| Best HMM Match : SAP (HMM E-Value=2.3) 29 4.3
SB_37579| Best HMM Match : SAP (HMM E-Value=2.3) 29 4.3
SB_34517| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_26251| Best HMM Match : RVT_1 (HMM E-Value=0.0014) 29 4.3
SB_22859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 29 4.3
SB_50658| Best HMM Match : Pox_D2 (HMM E-Value=4.7) 29 5.6
SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32) 29 5.6
SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_19710| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_6989| Best HMM Match : LRR_1 (HMM E-Value=0.074) 28 9.9
SB_52407| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
Length = 479
Score = 33.5 bits (73), Expect = 0.20
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 583 RGREVYSKHSVSTSHCASVVQKPANNPPAPWQPLFPLGPGLTWRGSKPLGNP--LLRAVV 756
RGR + + + S+VQ P PPAP P P P T PL P L V
Sbjct: 403 RGRTIRPFPTPNRRRRRSLVQPPPPPPPAPLPPPPPPPPQPTTALPDPLQGPEVALHVEV 462
Query: 757 SGPPD 771
S PPD
Sbjct: 463 SSPPD 467
>SB_41745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 32.3 bits (70), Expect = 0.46
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 675 ATVIPPWPWFNLEGKQTLGKSFASGGRFRTA 767
A VIP W FN+E ++L +SF G + TA
Sbjct: 368 AQVIPAWTGFNIEMHESLRESFVGMGAYHTA 398
>SB_31489| Best HMM Match : Ion_trans (HMM E-Value=0.015)
Length = 382
Score = 31.9 bits (69), Expect = 0.61
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 298 RWNQTDTDIYITSESRLQTDLMIMAIPVNPTL 393
RWNQ D I I S + + M M +P+NPT+
Sbjct: 37 RWNQLDMLIVILSIVGIALEEMTMELPINPTI 68
>SB_17341| Best HMM Match : RVT_1 (HMM E-Value=0.063)
Length = 376
Score = 31.9 bits (69), Expect = 0.61
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -2
Query: 694 QGGITVAKGLADCWRAFERRKHNDWLTRCVLNKLLSLDNIACVL 563
+GG+ V ADC + F+ H+ +LNKL SLDN C+L
Sbjct: 194 RGGVWVRWFFADCKKGFDLIDHH-----ILLNKLCSLDNHPCLL 232
>SB_12540| Best HMM Match : Pep_M12B_propep (HMM E-Value=3.4e-07)
Length = 697
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Frame = +1
Query: 316 TDIYITSESRLQTDLMIMAIPVNPTLEDAV------SVDVSVNYSTPTGRTRPLEYSCEF 477
T +Y +S D + A P+ L + + DVS YS P + P+ E
Sbjct: 437 TRVYYQHDSSEYRDRLYFAGPITEELTVVIIPIQGDNFDVSYKYSIPG--SSPVPSQSEV 494
Query: 478 VWASDDWEECIR 513
W+S W EC R
Sbjct: 495 QWSSGKWGECSR 506
>SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13)
Length = 553
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 152 DISSLQDNYLKYDPS---VPQNLQIVEMDSNILDLKETFV 262
D+++ YLKY P V + I+ SN +DLK+TF+
Sbjct: 29 DVTAANGKYLKYPPKTQEVDKYTFIIPASSNYIDLKKTFL 68
>SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)
Length = 713
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 784 PGNNRPAVRKRPPEAKDFPRVCFPSKLNQGQGGITVAKG-LADCWRAFERRKHNDWLTRC 608
P P +R P +K F R + Q Q T G LA W+ + KHN W T
Sbjct: 576 PATELPVMRTSGPPSK-FSRKATGRLVLQPQKTTTGRLGELAQHWQYYSHGKHNHWETST 634
Query: 607 VLNKLLSL 584
++ +++
Sbjct: 635 IITTAITI 642
>SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +1
Query: 649 PANNPPAPWQPLFPLGPG--LTW-RGSKPLGNPLLRAVVSGPPDGCSP 783
P++ PP P P P+G G W G PL P L + + PP P
Sbjct: 680 PSSAPPPPAPPPPPIGGGDPTIWVSGGPPLSAPPLSSTLGPPPPAPPP 727
>SB_54193| Best HMM Match : REF (HMM E-Value=8.4)
Length = 172
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 11 LQINFLKYQPSVPQRL 26
>SB_42670| Best HMM Match : RVT_1 (HMM E-Value=5.6e-27)
Length = 591
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 397 LQINFLKYQPSVPQRL 412
>SB_32784| Best HMM Match : RVT_1 (HMM E-Value=3.9e-26)
Length = 759
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 379 LQINFLKYQPSVPQRL 394
>SB_30073| Best HMM Match : RVT_1 (HMM E-Value=3e-26)
Length = 416
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 292 LQINFLKYQPSVPQRL 307
>SB_8667| Best HMM Match : SAP (HMM E-Value=2.3)
Length = 439
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 93 LQINFLKYQPSVPQRL 108
>SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)
Length = 845
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 628 LQINFLKYQPSVPQRL 643
>SB_567| Best HMM Match : RVT_1 (HMM E-Value=8.3e-05)
Length = 371
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 177 LQINFLKYQPSVPQRL 192
>SB_51268| Best HMM Match : SAP (HMM E-Value=2.3)
Length = 204
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 55 LQINFLKYQPSVPQRL 70
>SB_41512| Best HMM Match : SAP (HMM E-Value=2.3)
Length = 249
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 55 LQINFLKYQPSVPQRL 70
>SB_37579| Best HMM Match : SAP (HMM E-Value=2.3)
Length = 287
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 93 LQINFLKYQPSVPQRL 108
>SB_34517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 169 LQINFLKYQPSVPQRL 184
>SB_26251| Best HMM Match : RVT_1 (HMM E-Value=0.0014)
Length = 391
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 241 LQINFLKYQPSVPQRL 256
>SB_22859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1108
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 656 LQINFLKYQPSVPQRL 671
>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 1788
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 164 LQDNYLKYDPSVPQNL 211
LQ N+LKY PSVPQ L
Sbjct: 321 LQINFLKYQPSVPQRL 336
>SB_50658| Best HMM Match : Pox_D2 (HMM E-Value=4.7)
Length = 175
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 217 NLKILRHARIVFQVVVLKGADVEFFGVLRKF*N 119
+LK L H R+VF++ ++ DV + + +K+ N
Sbjct: 35 DLKKLMHQRVVFKIKAIRSKDVNDWKIFKKYRN 67
>SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32)
Length = 871
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 217 NLKILRHARIVFQVVVLKGADVEFFGVLRKF*N 119
+LK L H R+VF++ ++ DV + + +K+ N
Sbjct: 363 DLKKLMHQRVVFKIKAIRSKDVNDWKIFKKYRN 395
>SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1236
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 702 FNLEGKQTLGKSFASGGRFRTAGRLF 779
FN+ G QTLG++ A GG + A F
Sbjct: 622 FNVSGTQTLGENIADGGGLKLAFMAF 647
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +1
Query: 649 PANNPPAPWQPLFPLGPGLTWRGSKPLGNPLLRAVVSGP 765
P PP P P P GP RG P G P + GP
Sbjct: 401 PGMGPPRPMGPPGPHGPPFGPRGPPPHGGPPRGPMGPGP 439
>SB_19710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 575 NVIEGEKFIQNTACQPVIVLPSFKSPPTIRQPLGNRYSPL 694
N+++ + F++ TA P+ SP + QP+GNR + L
Sbjct: 32 NMVKTKSFLRPTAIPPIEKFFVTASPTSRIQPIGNRLAEL 71
>SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 520 VATVFKNDNCSVFHSKRKQCYRGREVYSKHSVSTSHCASVVQKPANNPP 666
+ VFKN + SV HS+ +QC + V+ S + A VV +NN P
Sbjct: 374 IRVVFKNQDYSVGHSQSEQCPISQVVFHIQGGSLASPALVV---SNNLP 419
>SB_6989| Best HMM Match : LRR_1 (HMM E-Value=0.074)
Length = 180
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 279 HGWDSSALESNRHRHLYNVRI*TANRFDDN 368
HGW ++A + LY+ + T +RFD N
Sbjct: 32 HGWSNTATDPVSRLSLYHTSVYTQSRFDFN 61
>SB_52407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 715 PSKLNQGQGGITVAKGLADCWRAFERRKHNDWLTRCVLNKLLSLDNIACVLNGTQN 548
P +G GGIT A G+ + A + + WL + + LS I V +G N
Sbjct: 458 PLDAMKGLGGITYAPGMTNTQAALDICRTQLWLNKKSGFRRLSFKRILIVTDGQSN 513
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 510 STCGSNGVQERQLFCVPFKTQAMLSRERSLFKTQRVNQSLCFR 638
+TCG+ G Q R FC P + S E + RV CF+
Sbjct: 970 ATCGT-GHQMRWRFCFPLSSSKNESGECKVKSPYRVESRFCFK 1011
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,551,099
Number of Sequences: 59808
Number of extensions: 632365
Number of successful extensions: 1761
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1745
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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