Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30689
(785 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50199-5|AAA91265.1| 395|Caenorhabditis elegans Hypothetical pr... 31 0.93
Z70682-5|CAA94586.1| 345|Caenorhabditis elegans Hypothetical pr... 29 2.9
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr... 29 3.8
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr... 29 3.8
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z96047-7|CAB09413.1| 561|Caenorhabditis elegans Hypothetical pr... 29 5.0
AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical ... 29 5.0
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 28 6.6
U23484-9|AAC46771.1| 304|Caenorhabditis elegans Hypothetical pr... 28 6.6
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 28 6.6
AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical ... 28 6.6
AF039040-1|AAB94184.1| 553|Caenorhabditis elegans Hypothetical ... 28 6.6
>U50199-5|AAA91265.1| 395|Caenorhabditis elegans Hypothetical
protein T14F9.2 protein.
Length = 395
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 661 DCWRAFERRKHNDWLTRCVLNKLLSLDNIACVLNGTQ 551
+ WRA R KH + RC + L+ L+ I+C + Q
Sbjct: 34 EVWRALYREKHGEKF-RCSVEMLMELEEISCEIEAEQ 69
>Z70682-5|CAA94586.1| 345|Caenorhabditis elegans Hypothetical
protein F08G5.6 protein.
Length = 345
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 337 ESRLQTDLMIMAIPVNPTLEDAVSVDVSVNYSTPTGRTRP 456
E D ++ AI PT E V +D SV PT TRP
Sbjct: 288 EKTSNPDCVLKAITSPPTSESKVLLDFSVETQFPTNITRP 327
>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
protein C37C3.6c protein.
Length = 1487
Score = 29.1 bits (62), Expect = 3.8
Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Frame = +1
Query: 91 TARTETGQADSRTF*ALQKIRHQLPSGQL-LEIRSERASESS-DCGNGQ*HFRLERD--F 258
T +T G+ D R +LP G ++I+ R S ++ NG HF L +
Sbjct: 222 TCKTIEGRFDERNLSPGYHDIIKLPEGATNIKIQEARKSTNNLALKNGSDHFYLNGNGLI 281
Query: 259 RYEGEAITAGTLLRWNQTDTDIYITSESRLQTDLMIMAIPVNPTLEDAVSVDVSVNYSTP 438
+ E E GT+ ++ + + ++++ L +L + + + + A+ + S+
Sbjct: 282 QVEKEVEVGGTIFVYDDAEPET-LSAQGPLSEELTVALLFRKGSRDTAIKYEFSI----- 335
Query: 439 TGRTRPLEYSCEFVWASDDWEEC 507
PLE ++++ D+W C
Sbjct: 336 -----PLEEEVDYMYKFDNWTPC 353
>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
protein C37C3.6a protein.
Length = 1558
Score = 29.1 bits (62), Expect = 3.8
Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Frame = +1
Query: 91 TARTETGQADSRTF*ALQKIRHQLPSGQL-LEIRSERASESS-DCGNGQ*HFRLERD--F 258
T +T G+ D R +LP G ++I+ R S ++ NG HF L +
Sbjct: 222 TCKTIEGRFDERNLSPGYHDIIKLPEGATNIKIQEARKSTNNLALKNGSDHFYLNGNGLI 281
Query: 259 RYEGEAITAGTLLRWNQTDTDIYITSESRLQTDLMIMAIPVNPTLEDAVSVDVSVNYSTP 438
+ E E GT+ ++ + + ++++ L +L + + + + A+ + S+
Sbjct: 282 QVEKEVEVGGTIFVYDDAEPET-LSAQGPLSEELTVALLFRKGSRDTAIKYEFSI----- 335
Query: 439 TGRTRPLEYSCEFVWASDDWEEC 507
PLE ++++ D+W C
Sbjct: 336 -----PLEEEVDYMYKFDNWTPC 353
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
protein C37C3.6b protein.
Length = 2167
Score = 29.1 bits (62), Expect = 3.8
Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Frame = +1
Query: 91 TARTETGQADSRTF*ALQKIRHQLPSGQL-LEIRSERASESS-DCGNGQ*HFRLERD--F 258
T +T G+ D R +LP G ++I+ R S ++ NG HF L +
Sbjct: 222 TCKTIEGRFDERNLSPGYHDIIKLPEGATNIKIQEARKSTNNLALKNGSDHFYLNGNGLI 281
Query: 259 RYEGEAITAGTLLRWNQTDTDIYITSESRLQTDLMIMAIPVNPTLEDAVSVDVSVNYSTP 438
+ E E GT+ ++ + + ++++ L +L + + + + A+ + S+
Sbjct: 282 QVEKEVEVGGTIFVYDDAEPET-LSAQGPLSEELTVALLFRKGSRDTAIKYEFSI----- 335
Query: 439 TGRTRPLEYSCEFVWASDDWEEC 507
PLE ++++ D+W C
Sbjct: 336 -----PLEEEVDYMYKFDNWTPC 353
>Z96047-7|CAB09413.1| 561|Caenorhabditis elegans Hypothetical
protein DY3.4a protein.
Length = 561
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 443 DARDHWNTVVNLCGLLTIGKNAF-DMR*QRCS--RTTIVLCSIQNASNV 580
D R HWNT++ L++ +N F R Q+ + + L S +N SN+
Sbjct: 20 DKRRHWNTIIRKSAHLSLVRNIFKKKRRQKLNYRHMSTFLASSENISNI 68
>AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical
protein C27A12.2 protein.
Length = 625
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 397 DAVSVDVSVNYSTPTGRTRPLEYSCEFVWASDDWEECIR-----HAVATVFKNDNCSVFH 561
DAV+ V V+ ++P R +P + CE+ D + IR H FK + C +
Sbjct: 429 DAVAKGVDVSEASPHHRKKPTLHKCEYCGRVDKYPSKIRAHMRTHTGEKPFKCEICGMAF 488
Query: 562 SKR 570
S++
Sbjct: 489 SQK 491
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 316 TDIYITSESRLQTDLMIMAIPVNPTLEDAVSVDVSVNYSTPTGRTRPLE 462
+D +S S +T IM + PT + ++D S+N T T TRPLE
Sbjct: 406 SDAKKSSPSPKRTSASIMGMTGLPTTQMNGALDSSINKYTCTKVTRPLE 454
>U23484-9|AAC46771.1| 304|Caenorhabditis elegans Hypothetical
protein EEED8.11 protein.
Length = 304
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 69 HRFPSTLHCANGNG---TSRF*NFLSTPKNSTSAPFRTTT*NT 188
HR PS+ H + N T++ STP STS P TTT T
Sbjct: 33 HRPPSSYHGGHHNDDDCTTKPPKSTSTPSTSTSTPTTTTTTTT 75
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 316 TDIYITSESRLQTDLMIMAIPVNPTLEDAVSVDVSVNYSTPTGRTRPLE 462
+D +S S +T IM + PT + ++D S+N T T TRPLE
Sbjct: 406 SDAKKSSPSPKRTSASIMGMTGLPTTQMNGALDSSINKYTCTKVTRPLE 454
>AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical
protein T22B11.4b protein.
Length = 615
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 38 EARQLSIHIATPIPLHIALRERKRDKPILELSKHSKKFDISSLQDNYLKYDPSVPQNLQI 217
E+ +H L + L E K D+P ++ ++D S DNY +YD +P +Q
Sbjct: 177 ESTPTGVHTCVASVL-VDLSESKEDQP--QVKDDDDEYDHS---DNYDQYDDDLPPEVQF 230
Query: 218 -VEMDSNILDLKETFVMKARRSR 283
++ S +L+ + RR+R
Sbjct: 231 DRDVFSGAKELESYYTATIRRAR 253
>AF039040-1|AAB94184.1| 553|Caenorhabditis elegans Hypothetical
protein T22B11.4a protein.
Length = 553
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 38 EARQLSIHIATPIPLHIALRERKRDKPILELSKHSKKFDISSLQDNYLKYDPSVPQNLQI 217
E+ +H L + L E K D+P ++ ++D S DNY +YD +P +Q
Sbjct: 177 ESTPTGVHTCVASVL-VDLSESKEDQP--QVKDDDDEYDHS---DNYDQYDDDLPPEVQF 230
Query: 218 -VEMDSNILDLKETFVMKARRSR 283
++ S +L+ + RR+R
Sbjct: 231 DRDVFSGAKELESYYTATIRRAR 253
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,989,185
Number of Sequences: 27780
Number of extensions: 464514
Number of successful extensions: 1509
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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