Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30689
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32190.1 68417.m04581 centromeric protein-related low similar...    31   1.1  
At2g44930.1 68415.m05593 expressed protein contains Pfam profile...    30   1.5  
At3g45940.1 68416.m04971 alpha-xylosidase, putative strong simil...    29   2.6  
At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family...    29   3.5  
At4g19865.1 68417.m02911 kelch repeat-containing F-box family pr...    29   4.6  
At1g63810.1 68414.m07221 nucleolar RNA-associated family protein...    29   4.6  
At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containi...    28   6.1  
At3g43460.1 68416.m04607 hypothetical protein                          28   6.1  

>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
 Frame = +2

Query: 98  ERKRDKPILELSKHSKKFDISSLQDN-YLKYDP-SVPQNLQIVEMDSNILDLK-ETFVMK 268
           E +++KP+LEL+ H    DIS +QD  Y K +   V QNL + E +S++++ K E   +K
Sbjct: 421 ELQKEKPLLELAMH----DISVIQDELYKKANAFQVSQNL-LQEKESSLVEAKLEIQHLK 475

Query: 269 ARRSRLGL 292
           + ++ L L
Sbjct: 476 SEQASLEL 483


>At2g44930.1 68415.m05593 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 515

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +2

Query: 29  VPHEARQLSIHIATPIPLHIALRERKRDKPILELSKHSKKF-DISSLQDNYLKYDPSVPQ 205
           VP+  R+++    TP  L I   +  +    LELSK   ++ D  +++ +  KY  ++  
Sbjct: 89  VPNRLRRVNPEAYTPQMLLIGPLQHSKKANALELSKTDLRYLDYMNMELHKKKYLNAIAN 148

Query: 206 NL--QIVEMDSNILDLKETFVMKA 271
               QI+E+   I++  E FV ++
Sbjct: 149 KYGDQIIEVFKEIIETSEKFVRES 172


>At3g45940.1 68416.m04971 alpha-xylosidase, putative strong
           similarity to alpha-xylosidase precursor GI:4163997 from
           [Arabidopsis thaliana]
          Length = 868

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +2

Query: 56  IHIATPIPLHIALRERKRDKPILELSKHSKKFDISSLQDNYLKYDPSVPQNLQIVEMDSN 235
           I I T  P   A+R R   + I   S   + F     +D YL+   S+P++  +     N
Sbjct: 121 ILIFTVDPFSFAVRRRSNGETIFNTSSSDESFGEMVFKDQYLEISTSLPKDASLYGFGEN 180


>At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family
           protein similar to proline-rich protein precursor
           GB:AAC34889 [Glycine max]
          Length = 388

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = +1

Query: 556 FHSKRKQCYRGREV-YSKHSVSTSHCASVVQKPANNPPAPWQPLFPLG 696
           +H +  Q   G    +  H   T H +  +    N PPA   P FP G
Sbjct: 226 YHHQYGQAQTGPNTGFQHHGAPTQHLSQPMYHSGNRPPASGGPQFPQG 273


>At4g19865.1 68417.m02911 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 393

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 89  QCGGESVWLCVWTVDVLRAAPSSCE 15
           +C G  VW  V +VDVL   P SC+
Sbjct: 360 KCDGGGVWGIVESVDVLYTVPISCQ 384


>At1g63810.1 68414.m07221 nucleolar RNA-associated family protein /
            Nrap family protein contains Pfam profile PF03813: Nrap
            protein; similar to nucleolar RNA-associated protein
            alpha (GI:18539461) [Mus musculus]
          Length = 1053

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
 Frame = -2

Query: 784  PGNNRPAVRKRPPEAKDFPR-VCFPSKLNQGQGGITVAKGLADCWRAFERRKHNDWLTRC 608
            P NN  AV     +   +PR + FPS+LNQG+    VA+G A   R F        L R 
Sbjct: 905  PLNNYDAVILLHRDKLPYPRRLLFPSELNQGK---HVARGKAS--RLFNPFMSPGDLKRS 959

Query: 607  ---VLNKLL-SLDNIACVLNGTQNNCRS*TPLLPHV 512
               + NKL+   +   C+L+G Q    +  P   H+
Sbjct: 960  HEELKNKLMVDFEPTKCLLSGLQEEFGTLKPWYDHI 995


>At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 889

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 384 SYIRRCGQCGRVSQLQHSNW 443
           S I+RC QC   + LQH NW
Sbjct: 849 SRIKRCLQCQPATTLQHVNW 868


>At3g43460.1 68416.m04607 hypothetical protein
          Length = 702

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +1

Query: 319 DIYITSESRLQTDLMIMAIPVNPTLEDAVSVDVSVN-YSTPTGRTRPLEYSCEFVWASDD 495
           D+  TS+     D +   +P           D  +N YS+P      LE   EF+  S D
Sbjct: 18  DLSTTSKDSESEDGVDHGLPERVLARGFFPKDARLNIYSSP----ELLEEIAEFLGGSSD 73

Query: 496 WEECIRHAVATVFKNDNCSVFHSKR 570
           +E  ++     +FK   C   HS +
Sbjct: 74  FERLLKSQFGKLFKYPVCQTAHSAK 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,915,701
Number of Sequences: 28952
Number of extensions: 425141
Number of successful extensions: 1289
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)