Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30687
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    64   2e-11
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    29   0.62 
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   5.8  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   5.8  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    26   7.6  
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    26   7.6  

>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
 Frame = +1

Query: 40  NIQSLTPIEIEKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYFIDILDKLNTL-QY 216
           +I +LT  + + +      MSP CQPFTR G   D  DPR+ +FL  +++L  +N L +Y
Sbjct: 58  DISTLTAKDFDAFDCKLWTMSPSCQPFTRIGNRKDILDPRSQAFLNILNVLPHVNNLPEY 117

Query: 217 ILMENVKGFE 246
           IL+ENV+GFE
Sbjct: 118 ILIENVQGFE 127



 Score = 31.5 bits (68), Expect = 0.15
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 279 LTYCGFVYQEFMLSPVSVGVPNSRLRYYCIAK 374
           L  CG+   E +LSP    +PNSR R+Y +A+
Sbjct: 139 LRNCGYNLIEGILSPNQFNIPNSRSRWYGLAR 170



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 526 FDICYADSNRACCFTKSIHTYVEG 597
           FDI   DS+  CCFT+     V+G
Sbjct: 225 FDIVKPDSSSCCCFTRGYTHLVQG 248


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 474 LFSIIPLRQ*GFAKVFGRHVISSSFLLKFHVLP 376
           LFS I      + KVFGR  I + FLL FH++P
Sbjct: 19  LFSAISFGISIYIKVFGRSSIVTFFLLCFHLVP 51


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = -2

Query: 236  LTFSIKIY*RVFNLSNISMKYKNELVLGSFSSKFFPLRVKGWQGGDMRTV-----SILYF 72
            +TF+  ++  +FN      + K+   LG FS++ F + V G   G    V       ++ 
Sbjct: 793  MTFTCFVFFDMFNALACRSETKSVFKLGIFSNRMFNIAVGGSLIGQALVVYASPFQRIFQ 852

Query: 71   SISIGVKDCIFLV 33
            + +IG+KD + L+
Sbjct: 853  TEAIGLKDVLILL 865


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 685 GSGWNFLAKPLKKGFKP*GSFYGPKGNP 768
           G G++F+   +K GFKP G     K  P
Sbjct: 748 GEGYSFIRTSMKGGFKPAGETADDKPEP 775


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 401 KDELITCLPKTFAKPH 448
           KD+L+ CLPKT AK H
Sbjct: 257 KDDLV-CLPKTVAKAH 271


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 311 KLLIDKSTVSQLFNK*ISNVEHSNPLTFSIK 219
           +LL  K +  +L    +SN+ H NP TF +K
Sbjct: 127 ELLHAKESELKLLKTQLSNLNHCNPETFELK 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,628,818
Number of Sequences: 5004
Number of extensions: 81908
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)