Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30687
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430...    63   2e-10
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    33   0.28 
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    31   1.5  
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581...    29   4.6  
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065...    29   6.1  

>01_05_0681 -
           24242485-24242560,24242721-24242785,24242874-24243029,
           24243073-24243121,24243291-24243366,24243456-24243666,
           24244038-24244160,24244245-24244363,24244439-24244532,
           24245123-24245233,24245336-24245392
          Length = 378

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   YKYNFPETLLFTKNIQSLTPIEIEKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYF 180
           Y+ NF     +  NIQ+LT  +++KYK    L+SPPCQP+TR G      D R  SF+  
Sbjct: 46  YELNFGHRP-YQGNIQTLTASDLDKYKAQAWLLSPPCQPYTRQGLQKHSADARAFSFIKI 104

Query: 181 IDILDKL-NTLQYILMENVKGFECS 252
           ++++  +    Q + +ENV GFE S
Sbjct: 105 LNLMKNMCFPPQMLFVENVVGFEVS 129



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/36 (52%), Positives = 26/36 (72%)
 Frame = +3

Query: 270 VEKLTYCGFVYQEFMLSPVSVGVPNSRLRYYCIAKR 377
           +E L+   F  QEF+LSP+  G+P SR RY+C+AKR
Sbjct: 136 IEVLSDLNFNTQEFILSPLQFGIPYSRPRYFCLAKR 171


>03_02_0234 +
           6625417-6626184,6626314-6626339,6626435-6626531,
           6627009-6627116,6627194-6627328,6627429-6627528,
           6627763-6627974,6628060-6628125,6628231-6628464,
           6628583-6628641,6628716-6628782,6628863-6629192,
           6629267-6629335,6629417-6629503,6629605-6629692,
           6630057-6630178,6630251-6630355,6630442-6630485,
           6630558-6630627,6630711-6630814,6630980-6631189,
           6632935-6633018,6633291-6634003,6634115-6634649,
           6634703-6634789,6634826-6634970,6635049-6635125,
           6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 82  IDTVLMSPPCQPFTRNGKNLDENDP----RTNSFLYFIDILDKLNTLQYILMENV 234
           +D +   PPCQ  +   +    NDP    +    + F+DI+  L   +Y+LMENV
Sbjct: 627 VDVICGGPPCQGISGFNRFRKHNDPLEDEKNKQLVVFMDIVKYLRP-KYVLMENV 680


>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
            7535889-7535932,7536042-7536146,7536223-7536344,
            7536807-7536894,7536966-7537052,7537718-7537786,
            7537859-7538188,7539777-7539824,7540003-7540069,
            7540150-7540208,7541220-7541453,7541536-7541601,
            7541684-7541883,7542104-7542197,7542295-7542414,
            7542596-7542703,7542808-7542871,7543378-7543409,
            7546049-7548007
          Length = 1407

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +1

Query: 52   LTPIEIEKYKIDTVLMSPPCQPFTRNGKNLDENDP----RTNSFLYFIDILDKLNTLQYI 219
            L P +     +D V   PPCQ  +   +N +   P    +    + F+D++  L   +Y+
Sbjct: 1010 LRPSKFPLGDVDVVCGGPPCQGISGYNRNREFEAPFKCEKNKQIIVFMDVVQFLKP-KYV 1068

Query: 220  LMENV 234
             MENV
Sbjct: 1069 YMENV 1073


>01_05_0080 -
           17957276-17957676,17957810-17957921,17958001-17958126,
           17958199-17958331,17960069-17960193,17960314-17960409,
           17960430-17960621,17960694-17960800,17961318-17961426,
           17961538-17961624,17963017-17963103,17964254-17964379
          Length = 566

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 70  EKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYFIDILDK 198
           ++ K+   L+SP  +P  R+ K +  N+P     L+ I I DK
Sbjct: 405 DRLKLFPNLLSPSTRPLLRSNKRVVTNNPSVKVRLWSIQISDK 447


>03_03_0258 -
           15905847-15905990,15906088-15906244,15906374-15906504,
           15906991-15907126,15907193-15907464,15907874-15908169,
           15908279-15908646,15908922-15908987,15909064-15909129,
           15909226-15909297,15909391-15909459,15909549-15909620,
           15909708-15909776,15909874-15909945,15910046-15910178,
           15911223-15911361
          Length = 753

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 88  TVLMSPPCQPFTRNGKNLDENDP 156
           T   SPP QP TRN +N + N P
Sbjct: 274 TTSQSPPRQPSTRNPRNRNRNPP 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,767,886
Number of Sequences: 37544
Number of extensions: 467614
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)