Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30687
         (837 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_566| Best HMM Match : Keratin_B2 (HMM E-Value=9)                    35   0.094
SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_42304| Best HMM Match : NHL (HMM E-Value=0)                         30   2.7  
SB_5455| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_566| Best HMM Match : Keratin_B2 (HMM E-Value=9)
          Length = 258

 Score = 34.7 bits (76), Expect = 0.094
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 523 IFDICYADSNRACCFTKSIHTYVEGT 600
           + DI  A S R+CCFTK+   Y EGT
Sbjct: 223 VLDIVTAKSRRSCCFTKAYGHYAEGT 248


>SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 85  DTVLMSPPCQPFTRNGKNLDENDPRTNS 168
           +T+  SPP  P TRN      NDPRT +
Sbjct: 114 ETIPQSPPTDPGTRNDLYRTRNDPRTRN 141


>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
          Length = 1279

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +2

Query: 515 KPIYLTFVMQILTGHVVLLKAYTLM*K-VQGSVVHWKQVMDLGTGGFLKIGLIISEVGEV 691
           K + ++F   I    +V+L + T+  K +QGS      VM+ G+  F+K G   S++GE 
Sbjct: 53  KTVKISFE-SIFENTLVVLVSVTVRDKHIQGSPFK-VNVMNPGSDSFVKFGRKGSDIGEF 110

Query: 692 DGIF 703
           +GIF
Sbjct: 111 NGIF 114


>SB_5455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 535 KCQIYWLPLHLVWHQVIIRHIIFNNTLKAMRFCKGFWKTCNK 410
           +  ++ LP   +  ++I   + ++   K  R CKGF K C++
Sbjct: 68  RATLFCLPRMDITFKLIFPRLYYDELYKCRRVCKGFKKLCDE 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,746,781
Number of Sequences: 59808
Number of extensions: 558923
Number of successful extensions: 1187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)