Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30687
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88310-2|AAB42338.2|  635|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine rec...    29   3.1  
U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase ...    29   4.1  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    29   4.1  
U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase ...    29   4.1  
AF078786-2|AAC26941.1|  889|Caenorhabditis elegans Hypothetical ...    28   9.5  
AF039039-1|AAB94180.2|  653|Caenorhabditis elegans Hypothetical ...    28   9.5  

>U88310-2|AAB42338.2|  635|Caenorhabditis elegans Hypothetical
           protein C24G7.2 protein.
          Length = 635

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = +2

Query: 287 LWICLSRVYVESCKCWSA*FKIEVLLYS*KGNTWNFKRKDELITCLPKTFAKPHCLKGII 466
           L +C ++ Y+E+C C  A + IE        N        E  TCL    AKP+   G I
Sbjct: 381 LSLCKAKFYMENCGCTPALYNIE--------NNLKECTPYETTTCLDNILAKPNKETGKI 432

Query: 467 ENNVPD 484
           E   P+
Sbjct: 433 EFQTPN 438


>U39472-11|AAP86619.2|  355|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 34 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 118 FTRNGKNLDENDPRTNSFLYFIDILDKLNTL-QYILMENVK 237
           F R G+N+DE   +   +LY I I   LNT+  +I   N+K
Sbjct: 179 FQRQGRNIDELTTQIMIYLYIIAICLSLNTIGWFISWRNLK 219


>U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase C2
           B isoform protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = +1

Query: 67  IEKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYFIDILDKLNTLQYILMENVKGFE 246
           I+ +KI+T  + PP +P  +  ++ +  D   +SFL    +  K+    + ++EN+KG E
Sbjct: 612 IDWFKIETRQIQPPFKPKLKTDRSTENFD---HSFL---KLPTKMTPPDWEVLENLKGDE 665

Query: 247 CSTF 258
            S F
Sbjct: 666 FSNF 669


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = +1

Query: 67  IEKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYFIDILDKLNTLQYILMENVKGFE 246
           I+ +KI+T  + PP +P  +  ++ +  D   +SFL    +  K+    + ++EN+KG E
Sbjct: 752 IDWFKIETRQIQPPFKPKLKTDRSTENFD---HSFL---KLPTKMTPPDWEVLENLKGDE 805

Query: 247 CSTF 258
            S F
Sbjct: 806 FSNF 809


>U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase c
           protein 2, isoformb protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = +1

Query: 67  IEKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYFIDILDKLNTLQYILMENVKGFE 246
           I+ +KI+T  + PP +P  +  ++ +  D   +SFL    +  K+    + ++EN+KG E
Sbjct: 612 IDWFKIETRQIQPPFKPKLKTDRSTENFD---HSFL---KLPTKMTPPDWEVLENLKGDE 665

Query: 247 CSTF 258
            S F
Sbjct: 666 FSNF 669


>AF078786-2|AAC26941.1|  889|Caenorhabditis elegans Hypothetical
           protein M01G5.1 protein.
          Length = 889

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 191 NISMKYKNELVLG-SFSSKFFPLRVKGWQGGDMRT 90
           NIS  + N  ++   F  KF+P RV+G +GG  R+
Sbjct: 818 NISADFTNPAMIPVKFERKFYPPRVRGRRGGRGRS 852


>AF039039-1|AAB94180.2|  653|Caenorhabditis elegans Hypothetical
           protein T08B1.6 protein.
          Length = 653

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +3

Query: 42  YTIFNTDRNRKV*N*HSSHVTTLPAFYSQWK-----KFG*K*SKNQLIFIFHRYIRQIKY 206
           +T   T R + V   H S VT++   ++ W      KFG + +    + + H Y   I+ 
Sbjct: 223 HTSGTTGRPKGVEMSHGSLVTSVSGIFTSWTIAYKWKFGLEDTYFSFLSLAHIYEHLIQT 282

Query: 207 PSIYFNGK 230
            +IYF GK
Sbjct: 283 LTIYFGGK 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,661,831
Number of Sequences: 27780
Number of extensions: 445449
Number of successful extensions: 1102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)