Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30687
         (837 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase fam...    69   5e-12
At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu...    30   1.7  
At1g08860.1 68414.m00987 copine, putative Similar to BONZAI1 [Ar...    29   2.9  

>At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase family
           protein contains Pfam profile PF00145: C-5
           cytosine-specific DNA methylase
          Length = 383

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   YKYNFPETLLFTKNIQSLTPIEIEKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYF 180
           Y++NF     +  NIQSLT  +++KY  D  L+SPPCQP+TR G      D R  SFL  
Sbjct: 54  YQHNFKHRP-YQGNIQSLTAADLDKYNADAWLLSPPCQPYTRQGLQKHSGDARAFSFLRI 112

Query: 181 IDIL-DKLNTLQYILMENVKGFECS 252
           ++++       Q + +ENV GFE S
Sbjct: 113 LELIPHTTKPPQMLFVENVVGFETS 137



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +3

Query: 279 LTYCGFVYQEFMLSPVSVGVPNSRLRYYCIAKR 377
           LT   +V QEF+LSP+  GVP SR RY+C+AKR
Sbjct: 147 LTKLDYVTQEFILSPLQFGVPYSRPRYFCLAKR 179



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = +1

Query: 511 REANIFDICYADSNRACCFTKSIHTYVEGTRLCGSLETSYGPRYR 645
           R  N  DI Y DS R CCFTKS + YV+GT   GSL  +  P+ +
Sbjct: 279 RWGNAMDIVYPDSKRCCCFTKSYYRYVKGT---GSLLATVQPKIK 320


>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
            putative similar to cytosine-5 methyltransferase (METII)
            [Arabidopsis thaliana] GI:6523846; contains Pfam profiles
            PF01426: BAH domain, PF00145: C-5 cytosine-specific DNA
            methylase
          Length = 1404

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 79   KIDTVLMSPPCQPFTRNGKNLDE--NDPRTNSFLYFIDILDKLNTLQYILMENVKGF 243
            ++D +   PPCQ F+R  +  D   +  +    L F+   D     +Y L+ENVK F
Sbjct: 1075 QVDFISGGPPCQGFSRLNRFSDGSWSKNQCQMILAFLSFADYFRP-KYFLLENVKTF 1130


>At1g08860.1 68414.m00987 copine, putative Similar to BONZAI1
           [Arabidopsis thaliana] GI:15487382; contains Pfam
           profile PF00168: C2 domain
          Length = 589

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 151 DPRTNSFLYFIDILDKLNTLQYILME 228
           DPRT S L++ID   +LN+ Q  +ME
Sbjct: 362 DPRTPSSLHYIDPSGRLNSYQQAIME 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,440,411
Number of Sequences: 28952
Number of extensions: 409125
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)