Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30684
(831 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 28 1.4
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 28 1.4
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.9
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 2.5
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 27 3.3
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 27 3.3
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 27 3.3
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 4.3
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 4.3
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 26 5.7
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|... 26 5.7
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 5.7
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 26 7.5
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 7.5
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 26 7.5
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 7.5
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 7.5
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 10.0
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 203 IYRMKSVGESTEPCGTPALMV 141
+YR KSV ES EP G P L +
Sbjct: 140 LYREKSVEESDEPSGIPILFI 160
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 130 SDTMTINAGVPQGSVLSPTLFILYISDMLSIDGMHCY 240
S +T+ + VP+ S FI Y S +LSI + C+
Sbjct: 39 SSRLTVRSAVPEKSAFGSIEFIFYFSVILSILTIACF 75
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -2
Query: 545 LPDDSETGHRSKFEPKYPNTLGRLQGYSLELRRHDKGV---LLRSERANLCLYRVELNQ 378
LPDDS+ H K+ K+ N L L + + +K + LL + + L++ EL Q
Sbjct: 106 LPDDSDATHLHKWLLKFQNMLTLLMSRAFHSIQDEKNINIELLDTPKLEKDLHKSELQQ 164
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 670 LAPNLLGPGGSQITKLSFPF*TSNNKKDGPVPDFSDKIPNSSTGFVFGSLLG 825
++PN LGP + L TS+N + +S P+S G +GS+ G
Sbjct: 773 VSPNPLGPNRRSSSVLQSQKSTSSNTSNRNNGGYSGSRPSSEMGHRYGSMSG 824
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 545 GKAKLASKMLGVPQQNEGVTFTPGTKGFLLYKAQVPGL 658
GK+ L S +LG N+G P +KG + Y +QVP L
Sbjct: 653 GKSSLISALLGELSLNKGSYNLPRSKG-VSYVSQVPWL 689
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 764 GTGPSFLLLEVQNGKESLVIWEPPGPRRLGASNS 663
G+ P+ L +Q+G +S W P P G S S
Sbjct: 524 GSLPNLSTLSLQSGPDSTATWHPEFPNSSGLSAS 557
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 314 SSLLHRAPRETLMADISRIPVLSSA 240
S+++ R P ET +AD+SR+P A
Sbjct: 441 SAVITRNPSETSLADLSRVPSYKEA 465
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 73 WIASFLDGRSITVVVDGDCSDTMTIN-AGVPQGS 171
W SFL G+ +TVV + S+ IN +P GS
Sbjct: 519 WSESFLAGKRLTVVKNQAVSNDDNINMVNIPDGS 552
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 154 GVPQGSVLSPTLFILYISDML 216
G+PQGS+LS L Y+ D++
Sbjct: 703 GIPQGSILSSFLCHFYMEDLI 723
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 508 NFERCPVSESSGRQSQ 555
NFE CPVS++ GR S+
Sbjct: 354 NFEWCPVSDALGRDSK 369
>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 160
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 212 MSLIYRMKSVGESTEPCGTPALMVMVSEQ 126
MSL+Y +SVG T PCG+ + ++ Q
Sbjct: 1 MSLVYLFQSVGILT-PCGSAGAIAYITSQ 28
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 205 SDMLSIDGMHCYADDSTGMRDI-SAIRVSLGARCKRDDLNLCL 330
S++LS+DG + DDS D+ + I +G + D +NL L
Sbjct: 950 SNILSLDGKFSFNDDSELWADLGNEINSEIGFLKEPDTMNLAL 992
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = -3
Query: 610 RESNPFVLLRNSQH--FGRQLGFAFQMTP-KLDIARNSNPSIPILSEGCRDTPWNCGAMT 440
R SN F S H FG + F P + + +SN + P SE C +N T
Sbjct: 228 RASNLFSSNEQSIHSSFGSKFHFDKSSNPFSFEFSPSSNAAKPSNSEECNIPKFNSSFKT 287
Query: 439 KGSFF 425
FF
Sbjct: 288 SNDFF 292
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 163 QGSVLSPTLFILYISDMLSIDGMHCY 240
+ S L+ +L LY+ D + ID H Y
Sbjct: 502 KSSTLTESLAFLYLEDNMPIDAFHLY 527
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 412 ARSLRRRTPLSWRRNSKEYPCNLPRVLGYLGSNFE 516
A +L R SW NS+E+P +L G +G +
Sbjct: 124 ADNLTRPHWTSWTENSEEFPSSLVMSTGVIGQRLK 158
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/80 (20%), Positives = 34/80 (42%)
Frame = +1
Query: 436 PLSWRRNSKEYPCNLPRVLGYLGSNFERCPVSESSGRQSQVGVQNAGSSSTERRGYFHAW 615
PL W++ E+ + P LGY+ + ++ S+V ++ E Y + +
Sbjct: 50 PLYWQQRGNEFQASPPPPLGYVTPEYGATGTPVNANNASRVDYATTAANVPEE--YANDY 107
Query: 616 DKRLFAL*STSSGPRVELLA 675
L + + + P V+ L+
Sbjct: 108 SSELAYIHNVNDMPHVDGLS 127
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2
Query: 437 GVLLRSERANLCLYRVELNQVQFTPFGDS 351
G+L++ ER NL YRV L QF P DS
Sbjct: 688 GILIKPERYNLFKYRVYL--PQFLPPTDS 714
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 154 GVPQGSVLSPTLFILYISDM 213
G PQGS++SP L +Y+ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,048,734
Number of Sequences: 5004
Number of extensions: 95635
Number of successful extensions: 260
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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