Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30684
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 40 0.003
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 35 0.069
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 35 0.091
02_01_0244 + 1603381-1603792,1604054-1604132,1604993-1605862,160... 35 0.091
07_03_1544 - 27585581-27585757,27585986-27586091,27586246-275863... 30 2.0
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 30 2.6
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 29 3.4
04_04_1701 + 35470535-35471170,35471254-35471403,35471745-354720... 28 7.9
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 28 7.9
04_03_0620 - 18088287-18088495,18089174-18089210,18089315-180893... 28 7.9
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +1
Query: 19 RALLSKLSSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFIL 198
++L LS G P+ WI + L V++ G +T G+ QG LSP LFIL
Sbjct: 53 QSLFQILSVKGFPDNWISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQGDPLSPYLFIL 112
Query: 199 YISDML 216
++D+L
Sbjct: 113 -VADVL 117
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 35.1 bits (77), Expect = 0.069
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 16 HRALLSKLSSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFI 195
H A+LS + G P +W+ S V+++G ++ GV QG LS LF+
Sbjct: 467 HSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRGVRQGVPLSLLLFV 526
Query: 196 L 198
L
Sbjct: 527 L 527
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 34.7 bits (76), Expect = 0.091
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +1
Query: 10 VWHRALLSKLSSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTL 189
+W +L L+ G PE WI L V+++G + G+ QG LS L
Sbjct: 1066 IWS-SLFKILAVRGFPENWISWIKGLLSSSKSAVLLNGVPGRWICCKKGLLQGDPLSSYL 1124
Query: 190 FILYISDML 216
FIL ++D+L
Sbjct: 1125 FIL-VADVL 1132
>02_01_0244 +
1603381-1603792,1604054-1604132,1604993-1605862,
1606019-1606276,1606675-1606834
Length = 592
Score = 34.7 bits (76), Expect = 0.091
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = -2
Query: 701 EPPGPRRL--GASNSTRGPELVLYKAKSLLSQA*K*PLRSVEELPAF-W---TPTWLCLP 540
EPP P L N + G ++ LY K+ ++ K PLR++EE+P+ W W
Sbjct: 128 EPPAPLSLRDDIKNLSSG-DVHLY-CKACSARLTKQPLRNIEEMPSLNWEDVADNWFGGC 185
Query: 539 DDSETGHRSKFEPKYPNTLGRLQGYSL 459
S G K +Y N GRL+G SL
Sbjct: 186 CTSFGGASEKLVSQYINAYGRLEGTSL 212
>07_03_1544 -
27585581-27585757,27585986-27586091,27586246-27586338,
27587840-27587958,27588486-27588746,27589226-27589515,
27589624-27590152
Length = 524
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -1
Query: 816 ASKNESR*RIGDFIGKIRNGPVLLVIGSSKWERKLGNLGAPGPKKIGSK*LHARPGTCAL 637
A+ + R R GD++ ++R P S W + GAP P S HA P A+
Sbjct: 26 AAAAKPRTRQGDYLDRLRGSP-------SSWASLAEDRGAPAPSPSPSGGRHAAPAAAAV 78
Query: 636 *SKK 625
SK+
Sbjct: 79 GSKE 82
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 115 VDGDCSDTMTINAGVPQGSVLSPTLFIL 198
++G+ +DT+ + G+ QG +SP LF+L
Sbjct: 301 INGELTDTVVPSRGIRQGDPISPYLFLL 328
>08_02_0104 + 12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/76 (21%), Positives = 32/76 (42%)
Frame = +1
Query: 13 WHRALLSKLSSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLF 192
+H + + G+ + L W A +G + +V D +CS T I+ V + P
Sbjct: 905 YHTQIEYRWGGEGLRKTLICWAAEKSEGGQVVLVEDEECSSTYCISFRVKNAEAVPP--- 961
Query: 193 ILYISDMLSIDGMHCY 240
+ + + I + C+
Sbjct: 962 VKELRKTMRIQALRCH 977
>04_04_1701 +
35470535-35471170,35471254-35471403,35471745-35472015,
35472152-35472262,35472476-35472650,35472748-35473020,
35473251-35473494,35473623-35473708,35473752-35473968
Length = 720
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 537 IWKAKPSW-RPKCWEFLNRTKGLLSRLGQKAF 629
IW+A + R CWE +N+ K ++R+G F
Sbjct: 387 IWEAMSTLTRSMCWEMVNKVKDRVNRVGIAIF 418
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +1
Query: 19 RALLSKLSSYGIPEGLCKWIASFLDGRSITVVVDGD----CSDTMTINAGVPQGSV 174
++LL+ SS+ +P WIA+ +D S +VVD D + I G+P G +
Sbjct: 165 KSLLNFQSSF-VPNQFASWIANHVDVSSSDIVVDDKVIPLTEDCVHIILGLPVGGI 219
>04_03_0620 -
18088287-18088495,18089174-18089210,18089315-18089395,
18089771-18089838,18093361-18094219
Length = 417
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 663 GVTCSQSSWARGLPNYQAFF 722
GV C Q++ +GLP YQ FF
Sbjct: 159 GVGCCQTTIPKGLPYYQVFF 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,720,707
Number of Sequences: 37544
Number of extensions: 684989
Number of successful extensions: 2045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2045
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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