Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30684
(831 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 57 1e-08
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 55 7e-08
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 54 9e-08
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 48 6e-06
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 31 1.0
AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock tr... 29 3.1
AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock tr... 29 3.1
AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical ... 29 3.1
AL117203-21|CAN86632.1| 171|Caenorhabditis elegans Hypothetical... 29 5.4
AL117203-20|CAB55118.1| 244|Caenorhabditis elegans Hypothetical... 29 5.4
Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical pr... 28 7.1
U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormon... 28 7.1
U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormon... 28 7.1
AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear recep... 28 7.1
AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical ... 28 7.1
AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein. 28 7.1
Z81113-10|CAB54300.1| 607|Caenorhabditis elegans Hypothetical p... 28 9.4
Z81059-7|CAB54217.1| 607|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 9.4
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 28 9.4
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 9.4
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 9.4
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
Frame = +1
Query: 34 KLSSYGIPEGLCKWIASFLDGRSITVVVDGDCS-DTMTINAGVPQGSVLSPTLFILYISD 210
KL+ +G+ C W FL+ R+ +V ++ S ++ I++GVPQGSV P LFIL+I++
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898
Query: 211 MLSID-----GMHCYADD 249
+L ID + C+ADD
Sbjct: 899 LL-IDLAPTINISCFADD 915
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 54.8 bits (126), Expect = 7e-08
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +1
Query: 16 HRALLSKLSSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFI 195
H LL KL S + L W+ FL RS V + S GVPQG+VLSP LF
Sbjct: 30 HDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFG 89
Query: 196 LYISDMLSI--DGMHC--YADDS 252
+Y++D+ SI + + C +ADD+
Sbjct: 90 IYVNDISSILPEKVACKQFADDT 112
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +1
Query: 16 HRALLSKLSSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTM-TINAGVPQGSVLSPTLF 192
H LL KL +GI C W FL R+ +V V+ + I++GVP+GSV P LF
Sbjct: 9 HSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGSVSGPFLF 68
Query: 193 ILYISDML 216
+++I+ +L
Sbjct: 69 LIFINSLL 76
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 48.4 bits (110), Expect = 6e-06
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +1
Query: 37 LSSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYISDML 216
+ + GI + W+ ++L R I D S T+ GVPQGSV+SP LF Y+ DM
Sbjct: 493 MEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMP 552
Query: 217 SIDG--MHCYADD 249
+ + YADD
Sbjct: 553 TQQDTMLISYADD 565
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 212 MSLIYRMKSVGESTEPCGTPALMVMVSEQ 126
+SL KS GE T+PCGTP + SE+
Sbjct: 50 ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78
>AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 646 SSGPRVELLAPNLLGPGGSQITKLSFPF*TSNNKKDGPVPDFSDKIPNSSTGFV 807
S GP AP+ G G K + P+ + + P D+S N+ +GF+
Sbjct: 444 SGGPSTSSSAPSGAGAGARMAQKRAAPYKNATRQMAQPQQDYSGGFVNNYSGFM 497
>AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 646 SSGPRVELLAPNLLGPGGSQITKLSFPF*TSNNKKDGPVPDFSDKIPNSSTGFV 807
S GP AP+ G G K + P+ + + P D+S N+ +GF+
Sbjct: 444 SGGPSTSSSAPSGAGAGARMAQKRAAPYKNATRQMAQPQQDYSGGFVNNYSGFM 497
>AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical
protein Y53C10A.12 protein.
Length = 671
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 646 SSGPRVELLAPNLLGPGGSQITKLSFPF*TSNNKKDGPVPDFSDKIPNSSTGFV 807
S GP AP+ G G K + P+ + + P D+S N+ +GF+
Sbjct: 444 SGGPSTSSSAPSGAGAGARMAQKRAAPYKNATRQMAQPQQDYSGGFVNNYSGFM 497
>AL117203-21|CAN86632.1| 171|Caenorhabditis elegans Hypothetical
protein Y48C3A.18b protein.
Length = 171
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 131 LIP*PLTLVFHKVRCSPPRFSSCISVTCCLLMAC 232
L+P P+TL+F ++ C P F+ + C + C
Sbjct: 17 LLPGPVTLMFERLPCLPAEFNPGVVNVACRVPDC 50
>AL117203-20|CAB55118.1| 244|Caenorhabditis elegans Hypothetical
protein Y48C3A.18a protein.
Length = 244
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 131 LIP*PLTLVFHKVRCSPPRFSSCISVTCCLLMAC 232
L+P P+TL+F ++ C P F+ + C + C
Sbjct: 90 LLPGPVTLMFERLPCLPAEFNPGVVNVACRVPDC 123
>Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 744 VIGSSKWERKLGNLGAPGPK 685
+ GS +W R+ G LG GPK
Sbjct: 409 ITGSEEWRRERGELGESGPK 428
>U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform b protein.
Length = 413
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 366 PIRRLAPESSPLQTQV*IVSLAPRSERDSDGRYIA 262
P+RRL P+S + T ++ L P R+ DG Y++
Sbjct: 295 PLRRLKPDSVEVATVKTLMLLKPTCLREIDGDYLS 329
>U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform a protein.
Length = 429
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 366 PIRRLAPESSPLQTQV*IVSLAPRSERDSDGRYIA 262
P+RRL P+S + T ++ L P R+ DG Y++
Sbjct: 311 PLRRLKPDSVEVATVKTLMLLKPTCLREIDGDYLS 345
>AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear receptor
NHR-105 protein.
Length = 429
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 366 PIRRLAPESSPLQTQV*IVSLAPRSERDSDGRYIA 262
P+RRL P+S + T ++ L P R+ DG Y++
Sbjct: 311 PLRRLKPDSVEVATVKTLMLLKPTCLREIDGDYLS 345
>AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 744 VIGSSKWERKLGNLGAPGPK 685
+ GS +W R+ G LG GPK
Sbjct: 409 ITGSEEWRRERGELGESGPK 428
>AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein.
Length = 542
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 744 VIGSSKWERKLGNLGAPGPK 685
+ GS +W R+ G LG GPK
Sbjct: 345 ITGSEEWRRERGELGESGPK 364
>Z81113-10|CAB54300.1| 607|Caenorhabditis elegans Hypothetical
protein F11F1.1 protein.
Length = 607
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 241 ADDSTGMRDISAIRVSLGARCKRDDLNLCLKWRTLW 348
A++ MR I I +S+G +C RD +++ +K T++
Sbjct: 381 AEEVQDMRLIDVIPMSIGVQCNRDYMSVLIKKGTVF 416
>Z81059-7|CAB54217.1| 607|Caenorhabditis elegans Hypothetical
protein F11F1.1 protein.
Length = 607
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 241 ADDSTGMRDISAIRVSLGARCKRDDLNLCLKWRTLW 348
A++ MR I I +S+G +C RD +++ +K T++
Sbjct: 381 AEEVQDMRLIDVIPMSIGVQCNRDYMSVLIKKGTVF 416
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -1
Query: 243 RIAMHAINRQHVTDIQDEKRGGEHRTLWNTSVNGHGIRAVTVYNDRDAPPIQKASDPLAE 64
RI+ NR V DI+ K GE LWN+ G+ V + P I +D L
Sbjct: 2844 RISKDLYNRDFVGDIESLKLHGEPIGLWNSREKGN----TNVNGAQKKPKITDNADELVV 2899
Query: 63 TL 58
+L
Sbjct: 2900 SL 2901
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -1
Query: 243 RIAMHAINRQHVTDIQDEKRGGEHRTLWNTSVNGHGIRAVTVYNDRDAPPIQKASDPLAE 64
RI+ NR V DI+ K GE LWN+ G+ V + P I +D L
Sbjct: 2844 RISKDLYNRDFVGDIESLKLHGEPIGLWNSREKGN----TNVNGAQKKPKITDNADELVV 2899
Query: 63 TL 58
+L
Sbjct: 2900 SL 2901
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -1
Query: 243 RIAMHAINRQHVTDIQDEKRGGEHRTLWNTSVNGHGIRAVTVYNDRDAPPIQKASDPLAE 64
RI+ NR V DI+ K GE LWN+ G+ V + P I +D L
Sbjct: 658 RISKDLYNRDFVGDIESLKLHGEPIGLWNSREKGN----TNVNGAQKKPKITDNADELVV 713
Query: 63 TL 58
+L
Sbjct: 714 SL 715
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -1
Query: 243 RIAMHAINRQHVTDIQDEKRGGEHRTLWNTSVNGHGIRAVTVYNDRDAPPIQKASDPLAE 64
RI+ NR V DI+ K GE LWN+ G+ V + P I +D L
Sbjct: 2844 RISKDLYNRDFVGDIESLKLHGEPIGLWNSREKGN----TNVNGAQKKPKITDNADELVV 2899
Query: 63 TL 58
+L
Sbjct: 2900 SL 2901
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -1
Query: 243 RIAMHAINRQHVTDIQDEKRGGEHRTLWNTSVNGHGIRAVTVYNDRDAPPIQKASDPLAE 64
RI+ NR V DI+ K GE LWN+ G+ V + P I +D L
Sbjct: 2844 RISKDLYNRDFVGDIESLKLHGEPIGLWNSREKGN----TNVNGAQKKPKITDNADELVV 2899
Query: 63 TL 58
+L
Sbjct: 2900 SL 2901
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,575,436
Number of Sequences: 27780
Number of extensions: 552395
Number of successful extensions: 1598
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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