Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30684
         (831 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18500.1 68416.m02351 nocturnin-related contains weak similar...    34   0.10 
At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi...    30   1.6  
At5g60010.1 68418.m07525 ferric reductase-like transmembrane com...    29   2.9  
At5g37010.1 68418.m04438 expressed protein                             29   3.8  
At3g07960.1 68416.m00973 phosphatidylinositol-4-phosphate 5-kina...    29   3.8  
At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein con...    29   3.8  
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila...    29   5.0  
At1g09040.1 68414.m01008 expressed protein                             29   5.0  
At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) ...    28   6.6  
At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1) ...    28   6.6  
At4g39550.1 68417.m05592 kelch repeat-containing F-box family pr...    28   6.6  
At3g45810.1 68416.m04958 ferric reductase-like transmembrane com...    28   6.6  
At3g08660.1 68416.m01006 phototropic-responsive protein, putativ...    28   6.6  
At1g19930.1 68414.m02498 kelch repeat-containing F-box family pr...    28   6.6  
At5g64780.1 68418.m08145 expressed protein similar to unknown pr...    28   8.7  
At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p...    28   8.7  

>At3g18500.1 68416.m02351 nocturnin-related contains weak similarity
           to Nocturnin (CCR4 protein homolog) (Swiss-Prot:O35710)
           [Mus musculus]
          Length = 262

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
 Frame = +1

Query: 430 RTPLSWRRNSKEYPCNLPRVLGYLGSNFERCPVSESSGRQSQV-------GVQNAGSSST 588
           R   SW R S+ Y   LP   G+L S F +CP+S  S R S V       G  ++   S+
Sbjct: 6   RVDCSWSRPSEAYRI-LPSG-GHLSSGFHQCPLSSLSFRSSFVCCSSSTSGPSDSNPESS 63

Query: 589 ERRGYFHAWDKRL 627
             R Y   W   L
Sbjct: 64  SNRSYSRRWQNPL 76


>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 521

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 324 VSEVENSLGRVSEWG-ELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQ 476
           + E     G +S  G E+    +N +   VC    KKDPF + P+ + V L+
Sbjct: 261 LDEATRLAGEMSRGGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVEKVLLE 312


>At5g60010.1 68418.m07525 ferric reductase-like transmembrane
           component family protein similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], respiratory burst oxidase
           homolog from Solanum tuberosum [GI:16549089]; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 839

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 25/85 (29%), Positives = 37/85 (43%)
 Frame = -1

Query: 759 GPVLLVIGSSKWERKLGNLGAPGPKKIGSK*LHARPGTCAL*SKKPFVPGVKVTPSFC*G 580
           G ++  +  S W RK GNLG+P  +K G    +  P T A+  K       + T S   G
Sbjct: 53  GSIIRTLSVSNW-RKSGNLGSPSTRKSG----NLGPPTNAVPKKTGPQRVERTTSSAARG 107

Query: 579 TPSILDANLALPSR*LRNWTSLEIR 505
             S+   +  +  R    W S+E R
Sbjct: 108 LQSLRFLDRTVTGRERDAWRSIENR 132


>At5g37010.1 68418.m04438 expressed protein
          Length = 637

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +1

Query: 415 RSLRRRTPLSWRRNSKEYPCNLPRVLGYLGSNFERCPVSESSGRQSQVGVQNAGSS 582
           R  RRRTP   R +SK       R  G  G+      VS S GR+S++   ++G+S
Sbjct: 178 RERRRRTPSRERDDSKSNRSG-SRERGSSGNGGGSRRVSRSPGRRSEINPNSSGNS 232


>At3g07960.1 68416.m00973 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 715

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 578 LPAFWTPTWLCLPDDSETGHRSK--FEPKYPNTLGRLQGYSLELRRHDKGVLLRSERA 411
           LP+   P W    + S +G+R+K    P+  +  GR+    +ELR +  G L   + A
Sbjct: 243 LPSQKMPVWYGASEQSSSGNRTKNSERPRRRSVDGRVSNGEMELRSNGSGYLQVDDNA 300


>At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to hydroxyisourate hydrolase (GI:19569603)
           [Glycine max]
          Length = 512

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 180 GEHRTLWNTSVNGHGIRAVTVYNDRDAPP 94
           G H  LW T++N   I ++  YND D PP
Sbjct: 175 GNHVKLW-TTINEANIFSIGGYNDGDTPP 202


>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
           to receptor-like protein kinase [Arabidopsis thaliana]
           gi|4008008|gb|AAC95352; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 840

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 609 RLGQKAFCFIKHKFRASRGVTCSQSS 686
           R+G++  CF  H+F  SR VT  Q S
Sbjct: 434 RIGEEETCFNSHQFDCSRDVTTDQFS 459


>At1g09040.1 68414.m01008 expressed protein
          Length = 911

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -2

Query: 776 SEKSGTGPSFLLLEVQNGKE 717
           S+K+GTGPS LL+E+Q   E
Sbjct: 670 SKKTGTGPSSLLVEIQETTE 689


>At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 529 KLDIARNSNPSIPILSEGC-RDTPW 458
           +L+I RN NP +  + EGC  + PW
Sbjct: 769 RLEIPRNLNPQVAAIIEGCWTNEPW 793


>At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 529 KLDIARNSNPSIPILSEGC-RDTPW 458
           +L+I RN NP +  + EGC  + PW
Sbjct: 769 RLEIPRNLNPQVAAIIEGCWTNEPW 793


>At4g39550.1 68417.m05592 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 392

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -2

Query: 278 MADISRI--PVLSSA*QCMPSIDSMSLIYRMKSVGESTEPCGTPALMVMVSEQSPSTTTV 105
           +A +SR+  P LS   +   S+ +   +Y+ +S+   TE C    L    S+ +P   T+
Sbjct: 36  LARVSRLYYPTLSLVSKSFRSLIASPDLYKTRSLLGRTESCLYVCLQEKDSDPNPRWFTL 95

Query: 104 MLRPSKKL 81
            L+P++ L
Sbjct: 96  CLKPNRTL 103


>At3g45810.1 68416.m04958 ferric reductase-like transmembrane
           component family protein similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], respiratory burst oxidase
           homolog from Solanum tuberosum [GI:16549089]; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 912

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 759 GPVLLVIGSSKWERKLGNLGAPGPKKIGS 673
           G ++  +  +KW RK GNLG+P  +K G+
Sbjct: 62  GSIIRSMSVNKW-RKSGNLGSPSTRKSGN 89


>At3g08660.1 68416.m01006 phototropic-responsive protein, putative
           contains similarity to root phototropism RPT2
           [Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
           transducer of phototropic response PMID:10662859
          Length = 582

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 255 RAVIRIAMHAINRQHVTDIQDEKRGGEHRTLWNTSVNGHGI 133
           R V  IAM+A  +Q V+ + +E +G +   +W   ++  GI
Sbjct: 167 RCVEAIAMNACRKQLVSGLSEELKGRDCLEMWTEELSALGI 207


>At1g19930.1 68414.m02498 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 344

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
 Frame = -2

Query: 329 RHKFRSSLLHRAPRETL---MADISRI--PVLSSA*QCMPSIDSMSLIYRMKSVGESTEP 165
           ++K  + L+   P + L   +A +SR+  P+LS   +   S+ ++  +Y+ +S+   TE 
Sbjct: 3   KNKVPTELIFSLPNDLLVNILARVSRLDYPILSLVSKRFSSVLTLPELYQTRSLVGLTEN 62

Query: 164 CGTPALMVMVSEQSPSTTTVMLRP-----SKKLAIHLQRPSGIP*DDSFDRSALCQTGT 3
           C    L+   +++ PS   +  RP     ++K + ++     IP      RS+L   G+
Sbjct: 63  CLYVCLLSSRADRIPSWFKLCRRPILASDTRKSSGYVLATIPIPHSPPLHRSSLVAVGS 121


>At5g64780.1 68418.m08145 expressed protein similar to unknown
           protein (pir||T04031)
          Length = 175

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -1

Query: 291 ERDSDGRYIAHPRAVIRIAMHAINRQHVTDIQDEKRGGEHRTLWNTSVNGHGIRAVT 121
           +R   G +     ++ ++  HA+N Q V+ +  E+RG E    W       G R  T
Sbjct: 16  DRTMYGAFRGAANSLSQLYTHAMNHQRVSFLAGERRGMEKLYQWIVRQEEQGTRVST 72


>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 477

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 175 LSPTLFILYISDMLSIDGMHCYADDSTGMRDISA 276
           LSP++F LY   +  +DG   Y  D +G R + A
Sbjct: 69  LSPSMFCLYRKPLNIVDGKMQYLFDESGRRYLDA 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,805,174
Number of Sequences: 28952
Number of extensions: 529927
Number of successful extensions: 1650
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)