Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30682
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    63   3e-11
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    27   2.9  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   5.1  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   5.1  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   6.7  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    25   8.9  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   8.9  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    25   8.9  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    25   8.9  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 28/45 (62%), Positives = 37/45 (82%)
 Frame = +3

Query: 255 ATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 389
           AT+GV+G+G GIG +F +LI G +RNPS++  LFS AILGFAL+E
Sbjct: 13  ATIGVSGAGVGIGLIFSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -1

Query: 436 AKSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMREPKTVPIPAPEPATPTV 257
           ++++ + ++    P A++    R+AY N      G L+        T PIP   P+TP  
Sbjct: 83  SRNNVSPVLTDLPPYAAEHPFSRLAYFNPAFNSPGILS----ASGLTSPIPESRPSTPMD 138

Query: 256 AHQHQ 242
            HQ +
Sbjct: 139 NHQER 143


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 251 VRDSGSSWFRSWYW 292
           V D G SWFR+ YW
Sbjct: 419 VLDCGMSWFRNEYW 432


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 48  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 161
           + VC    R C ++ +   L   + +C  +    DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 122 HLQQYPPIHRWYLLSLHSSLQC 187
           HL  Y P   WYL SLH    C
Sbjct: 63  HLTIYEPQLTWYLSSLHRITGC 84


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 136 PTHTQMVPAVPTQLSAVRS 192
           P HT  VPAVP+Q+  + S
Sbjct: 182 PVHTPAVPAVPSQVKDLPS 200


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 224 TLLPNSLVLVRDSGSSWFRSWYWN 295
           T++P SL LVR  G    RSW+++
Sbjct: 878 TIMP-SLYLVRGDGDPQLRSWFFS 900


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 182 QCGPSRPHRSLRTLTLLPNSLVLVRDSGSSWFRSWYWNSLRLPHHRLCQEPL 337
           +C PS P  SL+       SL+ V D   S+  S  WN    P  +L  EPL
Sbjct: 420 KCAPSSPTLSLQKHREHVKSLLYVPDLTPSFDGSDPWN----PSSQLLSEPL 467


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -3

Query: 311 EGAEDCSNTSSGTSYSHCRAPAPMNLAAESMSLVTDVVWKDRTAESCVG---TAGTICVW 141
           EG  D +++   +  +   +PAP+N A  SMS   +    + T+ +  G    +G I + 
Sbjct: 115 EGYADSNDSRPSSISNSSESPAPINSATASMSPANNTSGNNITSPNVRGELDMSGNIAMS 174

Query: 140 VGTAASGRTS 111
            G   +  TS
Sbjct: 175 GGPTNTASTS 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,347
Number of Sequences: 5004
Number of extensions: 58298
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)